Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DDE02_RS02440 Genome accession   NZ_CP029005
Coordinates   495204..496088 (+) Length   294 a.a.
NCBI ID   WP_161511722.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbW39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 490204..501088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE02_RS02415 (DDE02_02430) - 490517..491764 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  DDE02_RS02420 (DDE02_02435) wrbA 492126..492728 (+) 603 WP_081318513.1 NAD(P)H:quinone oxidoreductase -
  DDE02_RS02425 (DDE02_02440) xpt 492780..493355 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  DDE02_RS02430 (DDE02_02445) - 493428..494141 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  DDE02_RS02435 (DDE02_02450) - 494300..494971 (-) 672 WP_014207723.1 hypothetical protein -
  DDE02_RS02440 (DDE02_02455) tonB2 495204..496088 (+) 885 WP_161511722.1 energy transducer TonB Machinery gene
  DDE02_RS02445 (DDE02_02460) ybeY 496141..496617 (-) 477 WP_002119528.1 rRNA maturation RNase YbeY -
  DDE02_RS02450 (DDE02_02465) phoL 496627..497715 (-) 1089 WP_002119513.1 PhoH family protein -
  DDE02_RS02455 (DDE02_02470) miaB 497753..499204 (-) 1452 WP_068544669.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33606.21 Da        Isoelectric Point: 7.6072

>NTDB_id=289250 DDE02_RS02440 WP_161511722.1 495204..496088(+) (tonB2) [Acinetobacter pittii strain AbW39]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVVQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASTGNTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNTQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=289250 DDE02_RS02440 WP_161511722.1 495204..496088(+) (tonB2) [Acinetobacter pittii strain AbW39]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTGTTCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGTGCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAAATACTGAGTTAGA
AAGTTTGCAAAAGATACAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATAAAGACAGTAGACGGAATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATACTCAAGGGGGAATTCGTGCAATTCGCTTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATAGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.095

100

0.881

Multiple sequence alignment