Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EJB16_RS02895 Genome accession   NZ_CP034384
Coordinates   599601..600206 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157:H7 strain FRIK804     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 594601..605206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJB16_RS02865 (EJB16_02905) rsmS 595303..595467 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  EJB16_RS02870 (EJB16_02910) priC 595481..596008 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  EJB16_RS02875 (EJB16_02915) ybaN 596078..596455 (+) 378 WP_001188905.1 DUF454 family protein -
  EJB16_RS02880 (EJB16_02920) apt 596608..597159 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  EJB16_RS02885 (EJB16_02925) dnaX 597288..599219 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  EJB16_RS02890 (EJB16_02930) ybaB 599272..599601 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EJB16_RS02895 (EJB16_02935) recR 599601..600206 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EJB16_RS02900 (EJB16_02940) htpG 600316..602190 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  EJB16_RS02905 (EJB16_02945) adk 602371..603015 (+) 645 WP_001220233.1 adenylate kinase -
  EJB16_RS02910 (EJB16_02950) hemH 603147..604109 (+) 963 WP_001250105.1 ferrochelatase -
  EJB16_RS02915 (EJB16_02955) aes 604106..605065 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=289247 EJB16_RS02895 WP_001195025.1 599601..600206(+) (recR) [Escherichia coli O157:H7 strain FRIK804]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=289247 EJB16_RS02895 WP_001195025.1 599601..600206(+) (recR) [Escherichia coli O157:H7 strain FRIK804]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment