Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EIP87_RS28665 Genome accession   NZ_CP034354
Coordinates   5947673..5948182 (-) Length   169 a.a.
NCBI ID   WP_023121650.1    Uniprot ID   A0A3P4B2X0
Organism   Pseudomonas aeruginosa strain IMP-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5942673..5953182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIP87_RS28635 (EIP87_28635) - 5942719..5942928 (-) 210 WP_023121645.1 hypothetical protein -
  EIP87_RS28640 (EIP87_28640) - 5942991..5945075 (-) 2085 WP_023121646.1 ParB/RepB/Spo0J family partition protein -
  EIP87_RS28645 (EIP87_28645) - 5945156..5945986 (-) 831 WP_023121647.1 DUF932 domain-containing protein -
  EIP87_RS28655 (EIP87_28655) - 5946702..5946980 (-) 279 WP_023121648.1 hypothetical protein -
  EIP87_RS28660 (EIP87_28660) - 5947046..5947396 (-) 351 WP_023121649.1 DUF2958 domain-containing protein -
  EIP87_RS28665 (EIP87_28665) radC 5947673..5948182 (-) 510 WP_023121650.1 DNA repair protein RadC Machinery gene
  EIP87_RS28670 (EIP87_28670) - 5948562..5948885 (+) 324 WP_023121651.1 helix-turn-helix domain-containing protein -
  EIP87_RS28675 (EIP87_28675) - 5948890..5949384 (+) 495 WP_023121652.1 arsenate reductase ArsC -
  EIP87_RS28680 (EIP87_28680) arsB 5949392..5950468 (+) 1077 WP_023121653.1 ACR3 family arsenite efflux transporter -
  EIP87_RS28685 (EIP87_28685) arsC 5950478..5950900 (+) 423 WP_023121654.1 arsenate reductase (glutaredoxin) -
  EIP87_RS28690 (EIP87_28690) arsH 5950893..5951615 (+) 723 WP_031655584.1 arsenical resistance protein ArsH -
  EIP87_RS28695 (EIP87_28695) chrA 5951615..5952817 (+) 1203 WP_023121656.1 chromate efflux transporter -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18596.22 Da        Isoelectric Point: 6.3362

>NTDB_id=289233 EIP87_RS28665 WP_023121650.1 5947673..5948182(-) (radC) [Pseudomonas aeruginosa strain IMP-13]
MSQLSFSSFDSSLMVRDAQGRYLLATAEQILEAARQAIERKMQRGTSFTSPAAVKEYLRAKLAGFEHEVFAVLFMDTQHR
LIEYAEMFRGTIDGASVYPRELVKEALRLNAAAVIISHNHPSGNPEPSGADRALTQRLKEALGLVDVRVLDHVIVAGTDT
TSFAECGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=289233 EIP87_RS28665 WP_023121650.1 5947673..5948182(-) (radC) [Pseudomonas aeruginosa strain IMP-13]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATTCCTCGCTGATGGTGCGTGACGCACAGGGCCGCTACCTGCTGGCGACTGC
CGAGCAGATTCTGGAGGCCGCGCGCCAGGCCATCGAGCGCAAGATGCAACGCGGTACGTCGTTCACGTCGCCGGCGGCGG
TCAAGGAGTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCATGAGGTGTTCGCGGTGCTGTTCATGGACACGCAACATCGG
CTGATCGAATACGCCGAAATGTTCCGCGGCACCATCGACGGCGCATCGGTGTATCCGCGCGAGCTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCATCATTTCGCACAACCATCCGAGCGGCAATCCCGAGCCGAGCGGTGCCGACCGGGCGC
TGACCCAGCGGCTCAAGGAGGCGCTGGGGCTGGTGGACGTGCGCGTGCTGGATCACGTCATCGTGGCGGGCACCGACACC
ACATCGTTTGCCGAATGCGGCTTGATCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P4B2X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.775

84.024

0.385