Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EIP87_RS28250 Genome accession   NZ_CP034354
Coordinates   5876677..5877171 (-) Length   164 a.a.
NCBI ID   WP_023103898.1    Uniprot ID   A0ABM9KRW0
Organism   Pseudomonas aeruginosa strain IMP-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5871677..5882171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIP87_RS28225 (EIP87_28225) - 5871832..5873352 (-) 1521 WP_028698647.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  EIP87_RS28230 (EIP87_28230) - 5873368..5873724 (-) 357 WP_017516006.1 hypothetical protein -
  EIP87_RS28235 (EIP87_28235) - 5873721..5875115 (-) 1395 WP_023103896.1 integrating conjugative element protein -
  EIP87_RS28240 (EIP87_28240) - 5875125..5876072 (-) 948 WP_023103897.1 TIGR03756 family integrating conjugative element protein -
  EIP87_RS28245 (EIP87_28245) - 5876069..5876515 (-) 447 WP_017514119.1 TIGR03757 family integrating conjugative element protein -
  EIP87_RS28250 (EIP87_28250) radC 5876677..5877171 (-) 495 WP_023103898.1 DNA repair protein RadC Machinery gene
  EIP87_RS28255 (EIP87_28255) - 5877350..5878114 (-) 765 WP_028690954.1 DsbA family protein -
  EIP87_RS28260 (EIP87_28260) - 5878128..5880995 (-) 2868 WP_023103900.1 conjugative transfer ATPase -
  EIP87_RS28265 (EIP87_28265) - 5880995..5881435 (-) 441 WP_023103901.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17893.63 Da        Isoelectric Point: 5.5289

>NTDB_id=289232 EIP87_RS28250 WP_023103898.1 5876677..5877171(-) (radC) [Pseudomonas aeruginosa strain IMP-13]
MSFAINDSCVESLSAVAAQHEDWIIQQAIVLLEKRIFKAGPCLSQPAAVRDYLRVKLVAEPNEIFAAVFLDSMHQVLAYE
PLFRGTINSTSVYPRVVVQRVLELNAAAVIFAHQHPSGISEPSSADRVLTQQLQAALALIDVRVLDHIIVGQGSPFSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=289232 EIP87_RS28250 WP_023103898.1 5876677..5877171(-) (radC) [Pseudomonas aeruginosa strain IMP-13]
ATGTCTTTCGCCATCAATGACTCCTGTGTGGAGTCGCTTTCCGCCGTAGCTGCCCAGCACGAAGACTGGATCATCCAGCA
GGCCATCGTGCTGCTGGAAAAACGGATCTTCAAAGCTGGACCATGCCTCAGCCAGCCGGCCGCCGTGCGGGACTATCTGC
GCGTGAAACTGGTCGCTGAACCCAACGAGATATTCGCCGCTGTGTTCCTGGATAGCATGCACCAGGTGCTGGCCTACGAG
CCATTGTTCAGGGGCACGATCAACTCGACTTCTGTTTATCCACGTGTCGTCGTACAGCGTGTGCTGGAGTTGAACGCCGC
CGCGGTGATCTTCGCGCACCAGCACCCCTCGGGCATCTCCGAGCCGTCGAGCGCGGATCGTGTGCTGACCCAGCAACTGC
AGGCCGCGCTGGCGCTCATCGATGTACGGGTACTGGATCACATCATCGTAGGCCAAGGTTCCCCGTTCTCCTTTGCGGAG
TCAGGCCTGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.836

89.024

0.39