Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DCE79_RS17160 Genome accession   NZ_CP029002
Coordinates   3509346..3510302 (-) Length   318 a.a.
NCBI ID   WP_108714167.1    Uniprot ID   A0A2S1H5P9
Organism   Lysinibacillus sp. 2017     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3504346..3515302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCE79_RS17130 (DCE79_17130) - 3504523..3505170 (+) 648 WP_108714161.1 NAD(P)-dependent oxidoreductase -
  DCE79_RS17135 (DCE79_17135) - 3505245..3505856 (-) 612 WP_369916788.1 phosphatase PAP2 family protein -
  DCE79_RS17140 (DCE79_17140) - 3505947..3506279 (-) 333 WP_108714163.1 antibiotic biosynthesis monooxygenase -
  DCE79_RS17145 (DCE79_17145) - 3506411..3507460 (-) 1050 WP_108714164.1 siderophore ABC transporter substrate-binding protein -
  DCE79_RS17150 (DCE79_17150) - 3507639..3508406 (-) 768 WP_108714165.1 ABC transporter ATP-binding protein -
  DCE79_RS17155 (DCE79_17155) - 3508403..3509359 (-) 957 WP_108714166.1 iron chelate uptake ABC transporter family permease subunit -
  DCE79_RS17160 (DCE79_17160) ceuB 3509346..3510302 (-) 957 WP_108714167.1 ABC transporter permease Machinery gene
  DCE79_RS17165 (DCE79_17165) menC 3510544..3511653 (-) 1110 WP_108714168.1 o-succinylbenzoate synthase -
  DCE79_RS17170 (DCE79_17170) - 3511724..3512602 (-) 879 WP_234417287.1 GNAT family N-acetyltransferase -
  DCE79_RS17175 (DCE79_17175) - 3512863..3514347 (-) 1485 WP_108714170.1 peptide MFS transporter -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34861.11 Da        Isoelectric Point: 9.6947

>NTDB_id=289193 DCE79_RS17160 WP_108714167.1 3509346..3510302(-) (ceuB) [Lysinibacillus sp. 2017]
MRLWMLVVATIVLSFISLFIGAIDIKPSDLLDWDSDKTQIFLMSRVPRLIAIILAGAGMGISGLIMQSLSRNKFVSPTTS
GTLDAAKLGIIVSMVFFTNISYMGKIIFSFVFALIGMMVFMRLLESIKFKDVIFVPLIGIMYGNIIGAISTFIAYEADVM
QSVETFFLGSFTLVVSGRYELLYVAVPAIFLAYLYANKFTVAGMGEDFAKNLGLSYRTVLNLGLVLVALISTTVVLTVGV
IPFLGLIVPNLVSLYLGDNLRKTIPHTIFLGAAFLLMCDILSRLIVYPFEIPVNTTVAVIGSAIFLIMLFRGKAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=289193 DCE79_RS17160 WP_108714167.1 3509346..3510302(-) (ceuB) [Lysinibacillus sp. 2017]
ATGAGACTTTGGATGCTCGTTGTAGCAACCATCGTATTGTCCTTTATATCACTATTTATCGGTGCAATCGACATTAAGCC
GTCTGATTTATTAGACTGGGATTCAGATAAAACACAAATTTTCTTAATGAGTCGAGTGCCGCGATTAATAGCGATCATAC
TTGCTGGGGCAGGGATGGGTATTTCTGGTTTAATTATGCAAAGCTTAAGTCGTAACAAGTTCGTATCGCCGACAACATCG
GGTACACTTGATGCCGCAAAGCTAGGTATTATCGTATCAATGGTATTCTTTACAAATATATCTTATATGGGGAAAATCAT
CTTTAGTTTTGTTTTTGCTCTTATTGGTATGATGGTCTTCATGCGCCTACTTGAAAGTATTAAATTTAAAGATGTTATCT
TCGTACCGCTTATTGGGATTATGTACGGAAATATTATTGGTGCAATTTCAACATTTATCGCTTATGAAGCGGATGTAATG
CAAAGTGTAGAGACCTTCTTTTTAGGAAGCTTTACCTTAGTTGTATCAGGACGCTATGAATTACTTTACGTTGCGGTACC
TGCTATTTTCCTCGCTTATTTATATGCAAATAAGTTTACAGTTGCAGGGATGGGTGAAGATTTCGCTAAGAACTTAGGAT
TAAGTTATCGTACGGTTTTAAATCTTGGCTTAGTACTTGTCGCGCTTATTTCAACAACCGTTGTATTAACAGTCGGGGTT
ATTCCGTTCTTAGGATTAATCGTCCCAAACTTAGTTTCGTTATATTTAGGAGACAATTTACGCAAGACGATTCCACATAC
GATTTTTTTAGGAGCAGCTTTCCTATTAATGTGTGATATTTTAAGTCGTCTGATTGTTTATCCATTTGAAATTCCAGTAA
ATACAACAGTTGCGGTAATCGGCAGTGCCATCTTCTTAATTATGTTATTTAGGGGGAAAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1H5P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.266

99.371

0.509

Multiple sequence alignment