Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E2348C_RS20840 Genome accession   NC_011601
Coordinates   4058261..4058929 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O127:H6 str. E2348/69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4053261..4063929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2348C_RS20810 (E2348_C_3880) rfaQ 4053438..4054496 (-) 1059 WP_000360409.1 lipopolysaccharide core heptosyltransferase RfaQ -
  E2348C_RS20815 (E2348_C_3881) waaA 4054910..4056187 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  E2348C_RS20820 (E2348_C_3882) coaD 4056195..4056674 (+) 480 WP_001171875.1 pantetheine-phosphate adenylyltransferase -
  E2348C_RS20825 (E2348_C_3883) mutM 4056713..4057522 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  E2348C_RS20830 (E2348_C_3884) rpmG 4057620..4057787 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  E2348C_RS20835 (E2348_C_3885) rpmB 4057808..4058044 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  E2348C_RS20840 (E2348_C_3886) radC 4058261..4058929 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  E2348C_RS20845 (E2348_C_3887) coaBC 4059101..4060321 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  E2348C_RS20850 (E2348_C_3888) dut 4060299..4060757 (+) 459 WP_000976070.1 dUTP diphosphatase -
  E2348C_RS20855 (E2348_C_3889) slmA 4060864..4061460 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  E2348C_RS20860 (E2348_C_3890) - 4061504..4062463 (-) 960 WP_000340177.1 reverse transcriptase family protein -
  E2348C_RS20865 (E2348_C_3891) pyrE 4062760..4063401 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=28918 E2348C_RS20840 WP_001297375.1 4058261..4058929(-) (radC) [Escherichia coli O127:H6 str. E2348/69]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=28918 E2348C_RS20840 WP_001297375.1 4058261..4058929(-) (radC) [Escherichia coli O127:H6 str. E2348/69]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGAG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment