Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DCE79_RS11145 Genome accession   NZ_CP029002
Coordinates   2297713..2299407 (-) Length   564 a.a.
NCBI ID   WP_108713123.1    Uniprot ID   -
Organism   Lysinibacillus sp. 2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2292713..2304407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCE79_RS18645 - 2293645..2293782 (+) 138 WP_168214713.1 hypothetical protein -
  DCE79_RS11130 (DCE79_11130) - 2294431..2295402 (-) 972 WP_108713120.1 tyrosine-type recombinase/integrase -
  DCE79_RS11135 (DCE79_11135) spo0A 2295542..2296333 (-) 792 WP_108713121.1 sporulation transcription factor Spo0A -
  DCE79_RS11140 (DCE79_11140) - 2296649..2297575 (-) 927 WP_108713122.1 SpoIVB peptidase S55 domain-containing protein -
  DCE79_RS11145 (DCE79_11145) recN 2297713..2299407 (-) 1695 WP_108713123.1 DNA repair protein RecN Machinery gene
  DCE79_RS11150 (DCE79_11150) ahrC 2299424..2299873 (-) 450 WP_108713124.1 transcriptional regulator AhrC/ArgR -
  DCE79_RS11155 (DCE79_11155) - 2300048..2300869 (-) 822 WP_108713125.1 TlyA family RNA methyltransferase -
  DCE79_RS11160 (DCE79_11160) dxs 2300876..2302771 (-) 1896 WP_108713126.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DCE79_RS11165 (DCE79_11165) - 2302855..2303739 (-) 885 WP_108713127.1 polyprenyl synthetase family protein -
  DCE79_RS11170 (DCE79_11170) xseB 2303743..2303970 (-) 228 WP_108713128.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 63937.56 Da        Isoelectric Point: 4.6731

>NTDB_id=289173 DCE79_RS11145 WP_108713123.1 2297713..2299407(-) (recN) [Lysinibacillus sp. 2017]
MLRELSIRNFAIIDDLTVGFVDGLTVLTGETGAGKSIIIDAVNILAGGRGSTEFIRHGEKKAELGGLFQVNNEQHPIYLK
LEEHGIEVEEGTIILRRDLHDSGKSICRVNGKLVPLSVLREIGGSLIDIHGQHENQELMDEKFHIHLLDHFAHRELLTVK
ADYDDAFEAYRQLKREVAELSIDEQRMAQRIDLYQFQIQELEQAALRVDEEEALTEERTRLMNFHKIFERANMAYDSISG
DSNGLDKIGNAMRALEDIIELDPIFKEPSEAVTSSFYALQDAAYQIKNTLDDLEYDEERLNEVEQRLALYQTMKRKYGTT
VEEILAYFDKIEEELSQLLNRDETMHNNEQMLAKMEANLDKLSAQLTVIRKENALKLSEAIMNELRFLHMEKAQFIVNFD
KLNHFDANGKDGVAFYISTNVGEPPKSLPKVASGGELSRMMLALKTIFSTSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISINSQVLCISHLPQVAAMADHQYYIKKQVEHDRTFTTITEMQEQERIEEISRMMSGAEITELTLQHASELIQMASERKT
ALIK

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=289173 DCE79_RS11145 WP_108713123.1 2297713..2299407(-) (recN) [Lysinibacillus sp. 2017]
TTGTTAAGAGAATTAAGCATTCGAAACTTTGCAATTATTGATGATTTAACAGTGGGCTTTGTTGATGGCTTAACAGTACT
AACAGGTGAGACAGGTGCTGGTAAGTCGATTATCATTGATGCGGTTAATATTTTGGCAGGTGGCCGTGGCTCAACGGAAT
TTATTCGACATGGTGAGAAGAAAGCTGAGCTAGGTGGCTTATTCCAAGTAAATAATGAACAACATCCTATTTACTTGAAG
CTAGAAGAGCACGGGATTGAAGTTGAGGAAGGTACGATTATTTTACGTCGTGATTTACATGATTCTGGTAAAAGTATTTG
TCGTGTGAATGGCAAACTTGTTCCTTTATCTGTACTTCGTGAAATTGGGGGTAGCTTAATCGATATTCATGGTCAGCATG
AGAACCAAGAATTAATGGATGAAAAATTCCATATTCATTTACTCGATCATTTTGCTCATCGTGAGCTACTAACAGTGAAA
GCGGATTATGATGATGCATTTGAAGCATATCGTCAGTTAAAACGAGAAGTAGCTGAGTTAAGTATTGATGAACAGCGTAT
GGCTCAACGAATCGATTTGTATCAATTCCAAATTCAAGAGCTTGAACAAGCTGCTTTACGTGTGGATGAGGAAGAGGCAT
TAACCGAGGAACGTACGCGTTTAATGAATTTCCATAAAATTTTTGAACGTGCCAATATGGCCTATGATTCGATATCTGGG
GATTCCAACGGGCTTGATAAAATTGGGAATGCGATGCGTGCTTTAGAGGACATCATCGAGCTCGACCCAATTTTCAAAGA
ACCATCAGAAGCGGTCACGTCAAGCTTTTATGCACTACAAGATGCCGCTTATCAAATTAAAAATACCTTAGATGATTTAG
AATATGATGAAGAACGTTTAAATGAAGTTGAACAACGTCTAGCCCTTTATCAAACAATGAAGCGCAAGTACGGTACAACG
GTTGAAGAAATTTTAGCGTATTTTGACAAGATTGAAGAAGAATTATCTCAACTCCTTAATCGCGATGAAACAATGCATAA
TAATGAGCAAATGTTAGCAAAAATGGAAGCAAATTTAGATAAGCTTTCCGCTCAACTAACAGTAATTCGTAAAGAAAATG
CATTAAAATTAAGTGAAGCGATTATGAATGAATTACGTTTTTTACATATGGAAAAAGCGCAGTTCATCGTCAACTTTGAT
AAACTTAATCATTTTGATGCAAACGGGAAAGACGGAGTGGCGTTTTATATTTCAACAAATGTCGGCGAGCCACCAAAATC
GTTACCAAAAGTGGCATCTGGTGGGGAACTATCTCGTATGATGTTAGCGCTTAAAACCATTTTTTCTACTTCCAATGGGA
TTACATCCATTATTTTTGATGAAGTGGATACGGGCGTTAGCGGACGTGTCGCACAAGCGATTGCGGAAAAAATTGCAGCC
ATTTCCATTAATTCTCAAGTATTATGTATTTCGCATTTACCTCAAGTGGCAGCGATGGCCGATCACCAATATTACATTAA
AAAGCAAGTCGAGCATGATCGTACCTTTACGACAATTACTGAAATGCAAGAACAGGAACGTATCGAAGAAATTAGTCGTA
TGATGAGTGGTGCGGAAATAACAGAGCTGACATTACAACATGCATCTGAACTCATTCAGATGGCGAGTGAACGTAAGACA
GCATTAATTAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.562

100

0.527

Multiple sequence alignment