Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   D1J63_RS25170 Genome accession   NZ_CP034353
Coordinates   5600927..5602660 (-) Length   577 a.a.
NCBI ID   WP_125631856.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5595927..5607660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS25160 (D1J63_25160) - 5597725..5598926 (+) 1202 Protein_4885 RNA polymerase sigma factor -
  D1J63_RS25165 (D1J63_25165) rcrQ 5598999..5600927 (-) 1929 WP_125631854.1 ABC transporter ATP-binding protein Regulator
  D1J63_RS25170 (D1J63_25170) rcrP 5600927..5602660 (-) 1734 WP_125631856.1 ABC transporter ATP-binding protein Regulator
  D1J63_RS25175 (D1J63_25175) - 5602816..5604264 (-) 1449 WP_102931588.1 FGGY family carbohydrate kinase -
  D1J63_RS25180 (D1J63_25180) - 5604313..5604618 (-) 306 WP_164712967.1 YtxH domain-containing protein -
  D1J63_RS36805 - 5605238..5605390 (-) 153 WP_164712968.1 hypothetical protein -
  D1J63_RS25200 (D1J63_25200) - 5605458..5606876 (-) 1419 WP_125631858.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62518.70 Da        Isoelectric Point: 5.7855

>NTDB_id=289113 D1J63_RS25170 WP_125631856.1 5600927..5602660(-) (rcrP) [Streptomyces sp. KPB2]
MLIRLLRTYLRPYKKPIALLVALQFLQTCASLYLPTLNADIIDNGVVEGDSGYILSYGALMIGISLAQVVCNIGAVFYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMSFTLMVSAPIMCVGGIVMALGLDVPLSGV
LLGVVPVLAICVTLIVRKLRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTELTEVSLGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVTELRRHGHLEIREAGFRYPGAEEPVLRNIGLVAKPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGVDVR
TVDPKTLAKVVSLVPQKPYLFAGTVATNLRYGNPDATDEELWDALAVAQAKEFVSELEGGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=289113 D1J63_RS25170 WP_125631856.1 5600927..5602660(-) (rcrP) [Streptomyces sp. KPB2]
GTGCTCATACGACTACTGCGGACCTATCTCAGGCCGTACAAGAAACCCATCGCCCTGCTGGTGGCGCTGCAGTTCCTGCA
GACCTGCGCCTCCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTGGAAGGTGACTCGGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATCGGTGCCGTCTTCTACGGCGCG
CGCACCGCCGCCGCGCTCGGCCGGGACGTGCGCGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACGCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGTCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTA
CTGCTCGGGGTCGTGCCGGTGCTGGCGATCTGCGTCACGCTGATCGTGCGGAAGCTGCGCCCGCTGTTCCGCAAGATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGTTTCCGGAAGGCCAACACCGAGCTGACCGAGGTGTCCCTCGGCACCGGCAACCTGCTGGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGGGACCGAGAGCAGTGTGGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGGGAGGCGGGCTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTCAGGAACATCGGCCTGGTGGCCAAGCCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTGCTGGGCCTGGTCCCCCGGCTCTTCGACGCCACCGACGGGGAGGTCCTGGTCAACGGCGTGGACGTGCGC
ACCGTCGACCCGAAGACGCTGGCCAAGGTGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCGCCGGCACCGTCGCGAC
CAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGGACGCGCTGGCGGTGGCGCAGGCCAAGGAGTTCG
TCTCCGAGCTGGAGGGCGGGCTCGACGCGCCGATCTCCCAGGGCGGCACCAACGTGTCCGGCGGTCAGCGCCAGCGGCTC
GCCATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCCGCGCTGGCCCAGGAGACCGCCGAGGCGACGGTGGTCATCGTGGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.076

97.574

0.381