Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D1J63_RS25165 Genome accession   NZ_CP034353
Coordinates   5598999..5600927 (-) Length   642 a.a.
NCBI ID   WP_125631854.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5593999..5605927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS25150 (D1J63_25150) - 5594379..5595644 (+) 1266 WP_125631849.1 FAD-dependent oxidoreductase -
  D1J63_RS25155 (D1J63_25155) dnaG 5595675..5597600 (+) 1926 WP_125631851.1 DNA primase -
  D1J63_RS25160 (D1J63_25160) - 5597725..5598926 (+) 1202 Protein_4885 RNA polymerase sigma factor -
  D1J63_RS25165 (D1J63_25165) rcrQ 5598999..5600927 (-) 1929 WP_125631854.1 ABC transporter ATP-binding protein Regulator
  D1J63_RS25170 (D1J63_25170) rcrP 5600927..5602660 (-) 1734 WP_125631856.1 ABC transporter ATP-binding protein Regulator
  D1J63_RS25175 (D1J63_25175) - 5602816..5604264 (-) 1449 WP_102931588.1 FGGY family carbohydrate kinase -
  D1J63_RS25180 (D1J63_25180) - 5604313..5604618 (-) 306 WP_164712967.1 YtxH domain-containing protein -
  D1J63_RS36805 - 5605238..5605390 (-) 153 WP_164712968.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69535.85 Da        Isoelectric Point: 5.5586

>NTDB_id=289112 D1J63_RS25165 WP_125631854.1 5598999..5600927(-) (rcrQ) [Streptomyces sp. KPB2]
MAGPAGRMMAGGGPDQRSMDFKGSSKRLVAQFRPERATLFTLLACVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLDSMREHGDGNVADMLRSTDFTPGQGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRTVNRTMFRLREHVQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVQQWRSTGALNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGQLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGVRPEDLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLAADGAYARLYKAQFAEAVAE
VG

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=289112 D1J63_RS25165 WP_125631854.1 5598999..5600927(-) (rcrQ) [Streptomyces sp. KPB2]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGGTCGAGCAAACG
GCTCGTCGCCCAGTTCCGGCCGGAGCGGGCGACGCTGTTCACGCTGCTGGCCTGCGTGGTCGTCAGCGTCGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGTGCC
ACGAAGGAGCAGGTCCTGGACTCCATGCGCGAGCACGGTGACGGCAACGTCGCCGACATGCTCCGCAGCACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGGCGCGGTGGGCGAGGTGCTGCTCCTGGCGCTGGCGACCTTCGCGGTGGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACCGCACGGTCAACCGGACGATGTTCCGGCTGCGCGAGCACGTGCAGGCGAAG
CTGTCCCGGCTGCCGCTGTCCTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGAGCCGGGCGACCAACGACATCGACAA
TATCCAGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCCCTGGTGACCGTGCCGCTGTCCTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGCGCGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGTCTGCGGGTGGCCTCGGGCCAGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGATCTTCGAGC
TCCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGTTCGCCCGGAGGACCTGCGCGGCCGGGTGGAGCTGGAG
CACGTCTCCTTCCGCTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCCCTGAAGGTGGAGCCGGGCCACACCGTCGC
CATCGTCGGTCCGACGGGCGCGGGCAAGACGACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCACCCTGGACGGCGTCGACATCGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGAGGTCACCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTACGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCGTCCGTGGACACGCGCACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATTCTGGTCATGGAGGACGGGGCGATCGTGGAGCAGG
GGGCGCACGCGGAGCTGTTGGCCGCGGATGGCGCGTACGCACGGCTCTACAAGGCTCAGTTCGCGGAGGCGGTGGCTGAG
GTGGGGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.894

97.04

0.407

Multiple sequence alignment