Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J63_RS24925 Genome accession   NZ_CP034353
Coordinates   5544361..5545035 (+) Length   224 a.a.
NCBI ID   WP_164712964.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5539361..5550035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS24910 (D1J63_24910) - 5539806..5540813 (+) 1008 WP_125631778.1 SCO2521 family protein -
  D1J63_RS24915 (D1J63_24915) - 5540935..5543016 (+) 2082 WP_125631780.1 MMPL family transporter -
  D1J63_RS24920 (D1J63_24920) - 5543084..5544364 (+) 1281 WP_164712963.1 histidine kinase -
  D1J63_RS24925 (D1J63_24925) vraR 5544361..5545035 (+) 675 WP_164712964.1 response regulator transcription factor Regulator
  D1J63_RS24930 (D1J63_24930) - 5545125..5546273 (+) 1149 WP_125631783.1 abortive phage infection protein -
  D1J63_RS24935 (D1J63_24935) - 5546818..5547114 (+) 297 WP_125631785.1 hypothetical protein -
  D1J63_RS37325 - 5547292..5547612 (-) 321 WP_232249858.1 hypothetical protein -
  D1J63_RS37330 - 5548021..5548164 (-) 144 WP_232249859.1 hypothetical protein -
  D1J63_RS24950 (D1J63_24950) - 5548263..5548457 (-) 195 WP_125631787.1 DUF397 domain-containing protein -
  D1J63_RS24955 (D1J63_24955) - 5548439..5549272 (-) 834 WP_125635793.1 helix-turn-helix transcriptional regulator -
  D1J63_RS37335 (D1J63_24960) - 5549387..5549593 (+) 207 WP_125631790.1 hypothetical protein -
  D1J63_RS24965 (D1J63_24965) - 5549590..5549811 (+) 222 WP_125631792.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23671.10 Da        Isoelectric Point: 4.5519

>NTDB_id=289111 D1J63_RS24925 WP_164712964.1 5544361..5545035(+) (vraR) [Streptomyces sp. KPB2]
MTIRVLLADDQNLVRAAFALLVASAPDMEVVGEAGTGREAVELARTQRADLVVMDVRMPDLDGIEATRLIAADEDLAGVK
VLVLTTYDTDENVVDALHAGASGFLVKDTRPAELLDAIRTVTAGDALLSPGPTARLIERFLRSPSALHPSGSGPDCLSDR
ERQVLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLEVRDRAQLVIVAYESGLVTPGIGTG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=289111 D1J63_RS24925 WP_164712964.1 5544361..5545035(+) (vraR) [Streptomyces sp. KPB2]
ATGACGATTCGCGTGCTGCTGGCGGACGACCAGAACCTCGTCCGGGCGGCGTTCGCCCTGCTCGTGGCCTCGGCCCCCGA
CATGGAGGTGGTCGGCGAGGCGGGCACCGGGCGCGAAGCCGTGGAGCTGGCCCGCACCCAGCGCGCCGACCTGGTCGTCA
TGGACGTACGCATGCCCGACCTGGACGGCATCGAGGCGACCCGGCTGATCGCCGCCGACGAGGACCTGGCAGGTGTGAAG
GTGCTGGTCCTCACCACCTACGACACCGACGAGAACGTCGTCGACGCACTGCACGCGGGCGCCTCCGGATTCCTGGTCAA
GGACACGAGGCCCGCCGAACTCCTGGACGCCATCCGCACGGTGACGGCGGGCGACGCGCTCCTGTCGCCCGGCCCGACGG
CCCGCCTGATCGAGCGCTTCCTGCGCAGCCCGTCGGCGCTCCACCCGTCCGGATCGGGCCCCGACTGCCTTTCCGACCGG
GAACGCCAGGTCCTCACCCTGGTGGCCCGGGGCCTCAACAACACGGAGATCGCCGAAGCCCTGGGCCTGAGCCCGCTCAC
CGCGAAGACCCACGTCAGCCGCATCATGGGCAAGCTGGAGGTGCGGGACCGGGCCCAACTCGTCATCGTGGCCTACGAGT
CGGGCCTGGTGACGCCGGGCATCGGCACCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.249

96.875

0.371