Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM389_RS10975 Genome accession   NZ_CP028990
Coordinates   2154724..2155320 (-) Length   198 a.a.
NCBI ID   WP_068815217.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain AR_0142     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2149724..2160320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM389_RS10960 (AM389_10960) helD 2149932..2151986 (-) 2055 WP_068815215.1 DNA helicase IV -
  AM389_RS10965 (AM389_10965) - 2152111..2152557 (+) 447 WP_021312905.1 YccF domain-containing protein -
  AM389_RS10970 (AM389_10970) yccS 2152575..2154710 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AM389_RS10975 (AM389_10975) sxy/tfoX 2154724..2155320 (-) 597 WP_068815217.1 TfoX/Sxy family DNA transformation protein Regulator
  AM389_RS10985 (AM389_10985) sulA 2155669..2156178 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AM389_RS10990 (AM389_10990) ompA 2156531..2157601 (+) 1071 WP_002898408.1 porin OmpA -
  AM389_RS10995 (AM389_10995) matP 2157733..2158185 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AM389_RS11000 (AM389_11000) - 2158371..2160128 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22532.16 Da        Isoelectric Point: 10.0350

>NTDB_id=289106 AM389_RS10975 WP_068815217.1 2154724..2155320(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0142]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLLNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=289106 AM389_RS10975 WP_068815217.1 2154724..2155320(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0142]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACTCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment