Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   D1J63_RS15490 Genome accession   NZ_CP034353
Coordinates   3524782..3526767 (-) Length   661 a.a.
NCBI ID   WP_125629310.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3519782..3531767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS15470 (D1J63_15470) - 3520691..3521182 (+) 492 WP_125629308.1 transglycosylase SLT domain-containing protein -
  D1J63_RS15475 (D1J63_15475) - 3521205..3522014 (-) 810 WP_102928017.1 HAD family hydrolase -
  D1J63_RS15480 (D1J63_15480) fahA 3522314..3523549 (+) 1236 WP_125629309.1 fumarylacetoacetase -
  D1J63_RS15485 (D1J63_15485) - 3523805..3524743 (+) 939 WP_102928019.1 M56 family metallopeptidase -
  D1J63_RS15490 (D1J63_15490) recQ 3524782..3526767 (-) 1986 WP_125629310.1 DNA helicase RecQ Machinery gene
  D1J63_RS15495 (D1J63_15495) - 3526960..3527559 (+) 600 WP_125629311.1 Uma2 family endonuclease -
  D1J63_RS15500 (D1J63_15500) nuoN 3527652..3529310 (-) 1659 WP_125629312.1 NADH-quinone oxidoreductase subunit NuoN -
  D1J63_RS15505 (D1J63_15505) - 3529307..3530878 (-) 1572 WP_102928023.1 NADH-quinone oxidoreductase subunit M -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71594.00 Da        Isoelectric Point: 5.0883

>NTDB_id=289086 D1J63_RS15490 WP_125629310.1 3524782..3526767(-) (recQ) [Streptomyces sp. KPB2]
MGGTGVIGEMAETAQVRDGDSEALATLHRVFGYDAFRGEQEAIVEHVIAGGDAVVLMPTGGGKSLCYQIPSLVRPGTGIV
VSPLIALMQDQVDALRALGVRAGFMNSTQDFDERRVTEAEFLAGELDLLYLAPERLRLDSTLDLLSRGKISLFAIDEAHC
VSQWGHDFRPDYLALSLLGERWPDVPRLALTATATDATHREITERLHMPAARHFVASFDRPNIQYRIVPKSDPKKQLLGF
LRQEHPGDAGIVYCLSRNSVEKTAEFLSRNGVEAVPYHAGLDAGTRAAHQSRFLREEGLVVVATIAFGMGIDKPDVRFVA
HLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLNDVIQQRKLIQSGEGDEAFRRRAQSHLDAMLALCETARCRRGQLLAY
FGQDPDGAGCGNCDTCLTPPETWDGTVAAQKVLSTVVRLKRERGQKFGAGQIIDILLGKRTAKVIQFDHDQLSVFGIGEE
LTESEWRGVARQLLAQGLLAVEGEYGTLVLTDTSGEVLRREREVPLRKEPKKPAAARSAGGGRGERKAKAAAAELPAELV
PAFEALRAWRAEQAREQGVPAYVIFHDATLREVATVWPTSVAQLGGISGVGEKKLATYGEGVVGVLAALEGPATDGGGPA
GEEEWGPEPEPGPEPEPDDWA

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=289086 D1J63_RS15490 WP_125629310.1 3524782..3526767(-) (recQ) [Streptomyces sp. KPB2]
ATGGGCGGGACGGGCGTGATCGGCGAGATGGCAGAGACGGCGCAGGTGAGGGACGGGGACAGCGAGGCGCTGGCCACCCT
GCACCGGGTCTTCGGATACGACGCCTTCCGCGGTGAGCAGGAGGCGATCGTCGAGCACGTGATCGCCGGCGGTGACGCCG
TCGTGCTCATGCCGACCGGCGGCGGAAAGTCCCTGTGCTACCAGATTCCGTCCCTGGTGAGGCCCGGCACTGGCATCGTG
GTCTCGCCGCTGATCGCGCTGATGCAGGACCAGGTCGACGCGCTGCGGGCGCTCGGCGTGCGGGCGGGGTTCATGAACTC
CACGCAGGACTTCGACGAGCGGCGCGTGACCGAGGCCGAGTTCCTCGCCGGGGAGCTGGACCTGCTGTACCTGGCGCCCG
AGCGGCTGCGCCTGGACAGCACCCTCGACCTGCTCTCCCGCGGCAAGATCTCGCTCTTCGCCATCGACGAGGCGCACTGC
GTGTCGCAGTGGGGCCACGACTTCCGGCCCGACTACCTCGCCCTGTCCCTGCTCGGCGAGCGCTGGCCGGACGTGCCCCG
CCTCGCCCTCACGGCGACGGCCACCGACGCCACCCACCGCGAGATCACAGAGCGGCTGCACATGCCGGCGGCGCGGCACT
TCGTGGCCAGCTTCGACCGGCCCAACATCCAGTACCGGATCGTGCCGAAGTCCGACCCCAAGAAGCAGCTCCTGGGCTTC
CTGCGGCAGGAGCACCCCGGGGACGCCGGCATCGTGTACTGCCTCTCGCGCAACTCGGTGGAGAAGACCGCCGAGTTCCT
CTCGCGCAACGGAGTCGAGGCGGTGCCGTACCACGCGGGCCTGGACGCGGGCACCCGCGCCGCGCACCAGTCGAGGTTCC
TGCGCGAGGAGGGCCTGGTCGTCGTGGCGACCATCGCCTTCGGCATGGGCATCGACAAGCCCGACGTGCGGTTCGTCGCC
CACCTGGACCTGCCCAAGTCGGTCGAGGGCTACTACCAGGAGACCGGCCGTGCCGGGCGGGACGGCCTGCCCTCCACGGC
ATGGATGGCGTACGGCCTCAACGACGTCATACAGCAGCGCAAGCTGATCCAGTCCGGCGAGGGCGACGAGGCATTCCGGC
GCCGCGCCCAGTCCCATCTGGACGCCATGCTCGCCCTGTGCGAGACCGCCCGGTGCCGTCGCGGCCAGCTCCTCGCCTAC
TTCGGACAGGACCCGGACGGGGCCGGCTGCGGCAACTGCGACACCTGCCTGACCCCGCCCGAGACCTGGGACGGCACGGT
GGCGGCGCAGAAGGTGCTGTCGACGGTGGTGCGGCTGAAGCGCGAGCGAGGGCAGAAGTTCGGCGCCGGGCAGATCATCG
ACATCCTGCTGGGCAAGCGCACCGCCAAGGTGATCCAGTTCGACCACGACCAGCTCTCCGTGTTCGGCATCGGCGAGGAG
CTGACCGAGAGCGAGTGGCGGGGCGTCGCCCGGCAGCTGCTGGCCCAGGGCCTGCTCGCGGTGGAGGGGGAGTACGGCAC
GCTGGTGCTGACCGACACCAGCGGCGAGGTCCTGCGGCGCGAGCGGGAGGTGCCGCTGCGCAAGGAGCCCAAGAAGCCCG
CCGCGGCCAGGTCGGCGGGCGGTGGACGCGGCGAGCGCAAGGCGAAGGCGGCCGCGGCCGAGCTGCCCGCGGAGCTGGTC
CCCGCCTTCGAGGCACTGCGCGCCTGGCGTGCGGAACAGGCCCGCGAGCAGGGCGTCCCGGCGTACGTCATCTTCCACGA
CGCCACCCTCCGGGAGGTCGCCACCGTCTGGCCCACCTCGGTGGCGCAGCTCGGCGGCATCAGCGGGGTCGGTGAGAAGA
AGCTGGCGACGTACGGGGAGGGCGTGGTCGGCGTGCTGGCCGCACTGGAGGGCCCGGCCACCGACGGAGGAGGACCGGCG
GGGGAGGAGGAATGGGGCCCCGAGCCGGAGCCGGGACCGGAGCCCGAGCCCGACGACTGGGCGTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(40-196)

HRDC domain (HRDC)

(563-625)

RQC domain (RQC)

(419-533)

Helicase conserved C-terminal domain (Helicase_C)

(236-341)

RecQ zinc-binding (RecQ_Zn_bind)

(354-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.601

90.923

0.36