Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J63_RS09775 Genome accession   NZ_CP034353
Coordinates   2291736..2292413 (-) Length   225 a.a.
NCBI ID   WP_164712776.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2286736..2297413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS09760 (D1J63_09760) - 2286833..2288518 (-) 1686 WP_125628595.1 extracellular solute-binding protein -
  D1J63_RS09770 (D1J63_09770) - 2288849..2291683 (+) 2835 WP_125628596.1 glycoside hydrolase family 3 C-terminal domain-containing protein -
  D1J63_RS09775 (D1J63_09775) vraR 2291736..2292413 (-) 678 WP_164712776.1 response regulator transcription factor Regulator
  D1J63_RS09780 (D1J63_09780) - 2292410..2293651 (-) 1242 WP_125628598.1 histidine kinase -
  D1J63_RS09785 (D1J63_09785) - 2293794..2294924 (+) 1131 WP_125628599.1 glycosyltransferase 87 family protein -
  D1J63_RS09790 (D1J63_09790) - 2294921..2296135 (+) 1215 WP_125628600.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24183.90 Da        Isoelectric Point: 6.6549

>NTDB_id=289070 D1J63_RS09775 WP_164712776.1 2291736..2292413(-) (vraR) [Streptomyces sp. KPB2]
MIRALVADDQAVVRTGFVNLLATQEDIEVVAEAEDGVRAVLAARETRPDLALLDIRMPHKNGIDAAREILAASGGATKVL
MLTTFGLDEYVYDALAAGAGGFLLKDATFPELLHAVRVVASGNALLSPEITKRLIAEFVHARGSRLPVPAAADLTARETE
VLTLIARGLSNAEIAARLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLVRAGRESGARYR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=289070 D1J63_RS09775 WP_164712776.1 2291736..2292413(-) (vraR) [Streptomyces sp. KPB2]
GTGATCAGGGCACTGGTCGCCGACGACCAGGCGGTCGTCCGCACCGGCTTCGTGAACCTCCTGGCCACCCAGGAGGACAT
CGAGGTCGTCGCCGAGGCGGAGGACGGGGTGCGGGCGGTGCTGGCGGCCCGCGAGACCCGGCCCGACCTCGCGCTCCTGG
ACATCCGGATGCCGCACAAGAACGGCATCGACGCGGCCCGCGAGATCCTGGCCGCCTCCGGCGGCGCCACGAAGGTGCTG
ATGCTGACCACCTTCGGCCTCGACGAGTACGTGTACGACGCGCTCGCGGCCGGCGCGGGCGGCTTCCTGCTCAAGGACGC
CACGTTCCCCGAACTGCTGCACGCCGTACGGGTGGTGGCGAGCGGCAACGCCCTTCTGTCGCCGGAGATCACCAAGCGGC
TGATCGCCGAGTTCGTGCACGCGCGCGGTTCGCGGCTGCCCGTCCCCGCGGCCGCCGACCTCACCGCCCGGGAGACGGAG
GTGCTGACCCTGATCGCGCGGGGCCTGTCCAACGCGGAGATCGCGGCACGCCTCACCATCACCGACCACACCGTGAAGAC
CCACATCAACCGGCTCTTCGCCAAGCTGGAGCTGCGCGACCGCGCCCAGGCGGTGATCGTCGCCTACGAGCTGGGCCTGG
TCAGAGCGGGGCGTGAGTCGGGGGCCCGGTACCGGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.741

96

0.391