Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1J63_RS09125 Genome accession   NZ_CP034353
Coordinates   2127460..2128239 (+) Length   259 a.a.
NCBI ID   WP_061442172.1    Uniprot ID   A0ABW8BKT2
Organism   Streptomyces sp. KPB2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2122460..2133239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS09110 (D1J63_09110) - 2122709..2123242 (+) 534 WP_125628512.1 TerD family protein -
  D1J63_RS09115 (D1J63_09115) - 2123319..2126216 (-) 2898 WP_125628513.1 vitamin B12-dependent ribonucleotide reductase -
  D1J63_RS09120 (D1J63_09120) nrdR 2126382..2126930 (-) 549 WP_125628514.1 transcriptional regulator NrdR -
  D1J63_RS09125 (D1J63_09125) dinR/lexA 2127460..2128239 (+) 780 WP_061442172.1 transcriptional repressor LexA Regulator
  D1J63_RS09130 (D1J63_09130) - 2128328..2130346 (-) 2019 WP_102931389.1 ATP-dependent DNA helicase -
  D1J63_RS09135 (D1J63_09135) - 2130513..2131205 (-) 693 WP_125628515.1 GNAT family N-acetyltransferase -
  D1J63_RS09140 (D1J63_09140) - 2131268..2133025 (-) 1758 WP_241235538.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27972.69 Da        Isoelectric Point: 7.0666

>NTDB_id=289066 D1J63_RS09125 WP_061442172.1 2127460..2128239(+) (dinR/lexA) [Streptomyces sp. KPB2]
MTTTADSATITAQERPQGRPEPVHAMSDATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=289066 D1J63_RS09125 WP_061442172.1 2127460..2128239(+) (dinR/lexA) [Streptomyces sp. KPB2]
GTGACCACCACCGCCGACAGTGCCACCATCACTGCCCAGGAACGCCCCCAGGGCCGACCTGAGCCGGTGCACGCGATGAG
CGACGCCACGAATCCCGAGGGGCACAAGCGCTCCCTGCCGGGGCGACCTCCCGGCATCCGGGCGGACAGCTCAGGACTCA
CCGACCGCCAACGCCGGGTGATCGAGGTCATCCGTGACTCCGTGCAGCGGCGCGGGTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCCGTCGGCCTCTCCAGCACCTCCTCCGTGGCACACCAGCTGATGGCTCTGGAGCGCAAGGGCTTCCTGCGCAG
GGACCCGCACCGCCCGCGCGCCTACGAGGTGCGTGGCTCCGACCAGGCCGCCTCGGTGCAGCCCACGGACACCGCCGGAA
AGCCGGCCGCGTCGTACGTGCCGCTCGTCGGGCGCATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCCGTCGAGGAC
GTCTTCCCGCTCCCCCGGCAGCTGGTCGGCGACGGTGAGCTGTTCGTGCTGAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCGATCTGCGACGGGGACTGGGTCACGGTCCGCCGTCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACGCGGCCTACGAGCCG
ATCCCCGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTACTGCGTCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375