Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D1J60_RS28600 Genome accession   NZ_CP034350
Coordinates   6138616..6139245 (-) Length   209 a.a.
NCBI ID   WP_007267402.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6133616..6144245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS28575 (D1J60_28575) aceB 6133714..6135333 (-) 1620 WP_125823035.1 malate synthase A -
  D1J60_RS28580 (D1J60_28580) - 6135586..6136167 (-) 582 WP_125605428.1 nucleotidyltransferase family protein -
  D1J60_RS28585 (D1J60_28585) - 6136206..6136427 (-) 222 WP_125823036.1 hypothetical protein -
  D1J60_RS28590 (D1J60_28590) - 6136517..6138004 (+) 1488 WP_125823037.1 PLP-dependent aminotransferase family protein -
  D1J60_RS28595 (D1J60_28595) - 6138014..6138382 (-) 369 WP_125823038.1 hypothetical protein -
  D1J60_RS28600 (D1J60_28600) vraR 6138616..6139245 (-) 630 WP_007267402.1 response regulator transcription factor Regulator
  D1J60_RS28605 (D1J60_28605) - 6139248..6140432 (-) 1185 WP_125823039.1 sensor histidine kinase -
  D1J60_RS28610 (D1J60_28610) - 6140567..6141655 (+) 1089 WP_125823040.1 ABC transporter permease -
  D1J60_RS28615 (D1J60_28615) - 6141652..6142368 (+) 717 WP_125823041.1 ABC transporter ATP-binding protein -
  D1J60_RS28620 (D1J60_28620) - 6142445..6143248 (-) 804 WP_007267406.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21852.18 Da        Isoelectric Point: 6.1066

>NTDB_id=289033 D1J60_RS28600 WP_007267402.1 6138616..6139245(-) (vraR) [Streptomyces sp. W1SF4]
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAASEPVDVVLMDLQFGAGMHGSAATAAITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKRLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=289033 D1J60_RS28600 WP_007267402.1 6138616..6139245(-) (vraR) [Streptomyces sp. W1SF4]
ATGACCATCCGGCTGCTGCTCGCCGACGACCACCCCGTGGTGCGCGCCGGGCTGCGCGCGGTGCTGGACACCGAGCCGGA
CTTCGCGGTGGTCGCGGAGGCGGCGACGGCGGAGCGGGCGGTGGAGCTGGCCGCGTCCGAGCCGGTGGACGTCGTGCTGA
TGGACCTCCAGTTCGGGGCCGGGATGCACGGCTCGGCCGCCACGGCGGCGATCACCGCCCGGCCGGGCGCGCCCCGGGTC
CTCGTCCTGACCACCTACGACACCGACGCCGACATCCTGGCGGCGGTGGAGGCCGGCGCCTCGGGTTACCTGCTCAAGGA
CGCCCCGCCGGAGGAGCTGGCGGCGGCGGTGCGCACTGCGGCGGCCGGCCAGTCGGCGCTGGCCCCGGCGGTGGCGCTGC
GGCTGATGGACCGGATGCGCACCCCGGCGGAGGCGCTGACGAAGCGCGAGCTGGAGGTGCTCCAGCTGGTCGCGGACGGG
CTGTCGAACCAGCAGATCTCCAAGCGGCTGTTCCTGAGCCAGGCCACGGTCAAGTCCCACCTGGTGCACGTATACGCCAA
GCTCGGCGTCGACTCGCGCACCTCCGCGGTCGCCGCGGCCGCCACCCGCCGGCTGATCCGCACGCCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.619

100

0.378