Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DBK22_RS15440 Genome accession   NZ_CP028961
Coordinates   3109097..3109387 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3104097..3114387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS15400 (DBK22_03097) darA 3104114..3104443 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  DBK22_RS15405 (DBK22_03098) - 3104456..3104896 (+) 441 WP_004264730.1 YaaR family protein -
  DBK22_RS15410 (DBK22_03099) holB 3104908..3105897 (+) 990 WP_129003961.1 DNA polymerase III subunit delta' -
  DBK22_RS15415 (DBK22_03100) ricT 3105900..3106727 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DBK22_RS15420 (DBK22_03101) yabA 3106742..3107101 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  DBK22_RS15425 (DBK22_03102) - 3107162..3107905 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DBK22_RS15430 (DBK22_03103) - 3107892..3108191 (+) 300 WP_060561981.1 GIY-YIG nuclease family protein -
  DBK22_RS15435 (DBK22_03104) rsmI 3108166..3109047 (+) 882 WP_160242487.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DBK22_RS15440 (DBK22_03105) abrB 3109097..3109387 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DBK22_RS15445 (DBK22_03106) metG 3109871..3111862 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  DBK22_RS15450 (DBK22_03107) - 3111938..3112705 (+) 768 WP_160242488.1 TatD family hydrolase -
  DBK22_RS15455 (DBK22_03108) - 3112840..3114165 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=289020 DBK22_RS15440 WP_169510469.1 3109097..3109387(-) (abrB) [Bacillus velezensis strain SRCM102752]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=289020 DBK22_RS15440 WP_169510469.1 3109097..3109387(-) (abrB) [Bacillus velezensis strain SRCM102752]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment