Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   D1J60_RS14840 Genome accession   NZ_CP034350
Coordinates   3221505..3222482 (-) Length   325 a.a.
NCBI ID   WP_125603666.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3216505..3227482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS14820 (D1J60_14820) - 3216828..3217616 (+) 789 WP_125821415.1 DUF6227 family protein -
  D1J60_RS14825 (D1J60_14825) pfkB 3217702..3218640 (-) 939 WP_125821416.1 1-phosphofructokinase -
  D1J60_RS14830 (D1J60_14830) - 3218796..3220358 (-) 1563 WP_125821417.1 MFS transporter -
  D1J60_RS14835 (D1J60_14835) - 3220421..3221362 (+) 942 WP_125821418.1 YafY family protein -
  D1J60_RS14840 (D1J60_14840) rpoS 3221505..3222482 (-) 978 WP_125603666.1 sigma-70 family RNA polymerase sigma factor Regulator
  D1J60_RS14845 (D1J60_14845) - 3223026..3223679 (+) 654 WP_125821419.1 Uma2 family endonuclease -
  D1J60_RS14850 (D1J60_14850) - 3223676..3224458 (-) 783 WP_125824036.1 class III extradiol ring-cleavage dioxygenase -
  D1J60_RS14855 (D1J60_14855) - 3224606..3226147 (-) 1542 WP_125821420.1 MFS transporter -
  D1J60_RS14860 (D1J60_14860) - 3226271..3226927 (-) 657 WP_125821421.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36679.44 Da        Isoelectric Point: 4.9036

>NTDB_id=288992 D1J60_RS14840 WP_125603666.1 3221505..3222482(-) (rpoS) [Streptomyces sp. W1SF4]
MATRAVARRQSTSSARAAGGEIVDRDLVGMYLDEIARTPLLDAAREVELSQIIEAGVYARQILDGEIERDGEMPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDTTEKRVGDVLDWARDPVSLNMSVDDEGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=288992 D1J60_RS14840 WP_125603666.1 3221505..3222482(-) (rpoS) [Streptomyces sp. W1SF4]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCCCGCGCTGCGGGCGGGGAAATCGTCGACCGCGACCT
GGTCGGCATGTACCTCGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAGGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCGGCAGATCCTCGACGGCGAGATAGAGCGTGACGGGGAGATGCCCGCCCGCGAGGAGCTGGAA
GCCCTGGCCGCCGAAGGCGAGCGCGCCAAGGAAGTCTTCATCCGGTCCAACCTCCGCCTGGTCGTGGCCGTCGCCCGCCG
CTACCCCCGCAGCGGCCTGCCCCTGCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGGTCCGGGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTCGTGGAGGAGCTCGGCCGGATCCGCCGCATCCAGCGCGAGTTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCCGAGATCGCCGCCGAACTCGACACCACCGAGAAGCGCGTGGGCGACGTCCTGGACT
GGGCGCGCGACCCGGTCAGCCTCAACATGTCGGTCGACGACGAGGGCGACACCCAGTTCGGCGACCTGCTGGAGGACACC
TCCGCGATCTCGCCCGAACAGTCCGTGCTGTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTCCTCGGCAAGCTCGACCA
GCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGAGGACGGCCGCGAGCGGACCCTGACCGAGGTCGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTCAAGCGCATGGCCCGCGACACCGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366

Multiple sequence alignment