Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DBK22_RS07830 Genome accession   NZ_CP028961
Coordinates   1621586..1622353 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain SRCM102752     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1616586..1627353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS07810 (DBK22_01576) - 1616788..1617600 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  DBK22_RS07815 (DBK22_01577) ccpN 1617626..1618264 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  DBK22_RS07820 (DBK22_01578) glyS 1618365..1620404 (-) 2040 WP_160242157.1 glycine--tRNA ligase subunit beta -
  DBK22_RS07825 (DBK22_01579) glyQ 1620397..1621284 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  DBK22_RS07830 (DBK22_01580) recO 1621586..1622353 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  DBK22_RS07835 (DBK22_01581) - 1622390..1622533 (-) 144 WP_007408286.1 YqzL family protein -
  DBK22_RS07840 (DBK22_01582) era 1622689..1623594 (-) 906 WP_007408285.1 GTPase Era -
  DBK22_RS07845 (DBK22_01583) - 1623575..1623985 (-) 411 WP_160242158.1 cytidine deaminase -
  DBK22_RS07850 (DBK22_01584) - 1624109..1624483 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  DBK22_RS07855 (DBK22_01585) ybeY 1624464..1624937 (-) 474 WP_085342199.1 rRNA maturation RNase YbeY -
  DBK22_RS07860 (DBK22_01586) - 1624938..1627070 (-) 2133 WP_160242159.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=288988 DBK22_RS07830 WP_007408287.1 1621586..1622353(-) (recO) [Bacillus velezensis strain SRCM102752]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=288988 DBK22_RS07830 WP_007408287.1 1621586..1622353(-) (recO) [Bacillus velezensis strain SRCM102752]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment