Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DBK22_RS06265 Genome accession   NZ_CP028961
Coordinates   1290507..1291115 (+) Length   202 a.a.
NCBI ID   WP_031304205.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1285507..1296115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS06225 (DBK22_01260) - 1286560..1287066 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  DBK22_RS06230 (DBK22_01261) - 1287205..1287618 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  DBK22_RS06235 (DBK22_01262) - 1287648..1288082 (-) 435 WP_025284916.1 YppG family protein -
  DBK22_RS06240 (DBK22_01263) - 1288269..1288451 (+) 183 WP_003153532.1 YppF family protein -
  DBK22_RS06245 (DBK22_01264) - 1288490..1288858 (-) 369 WP_098081526.1 YppE family protein -
  DBK22_RS06250 (DBK22_01265) - 1288904..1289149 (-) 246 WP_015240083.1 DUF5446 family protein -
  DBK22_RS06255 (DBK22_01266) sspM 1289355..1289459 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  DBK22_RS06260 (DBK22_01267) - 1289503..1290465 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  DBK22_RS06265 (DBK22_01268) recU 1290507..1291115 (+) 609 WP_031304205.1 Holliday junction resolvase RecU Machinery gene
  DBK22_RS06270 (DBK22_01269) - 1291154..1293937 (+) 2784 WP_160242102.1 PBP1A family penicillin-binding protein -
  DBK22_RS06275 (DBK22_01270) - 1294015..1294506 (-) 492 WP_160242103.1 YpoC family protein -
  DBK22_RS06280 (DBK22_01271) nth 1294503..1295162 (-) 660 WP_151280689.1 endonuclease III -
  DBK22_RS06285 (DBK22_01272) dnaD 1295181..1295879 (-) 699 WP_052827591.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.73 Da        Isoelectric Point: 9.5778

>NTDB_id=288979 DBK22_RS06265 WP_031304205.1 1290507..1291115(+) (recU) [Bacillus velezensis strain SRCM102752]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=288979 DBK22_RS06265 WP_031304205.1 1290507..1291115(+) (recU) [Bacillus velezensis strain SRCM102752]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
TTACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment