Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1J60_RS09245 Genome accession   NZ_CP034350
Coordinates   1969703..1971844 (-) Length   713 a.a.
NCBI ID   WP_125820779.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1964703..1976844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS09230 (D1J60_09230) - 1965773..1966759 (-) 987 WP_125820776.1 TerC/Alx family metal homeostasis membrane protein -
  D1J60_RS09235 (D1J60_09235) - 1967018..1968994 (-) 1977 WP_125820777.1 TerD family protein -
  D1J60_RS09240 (D1J60_09240) - 1969040..1969618 (-) 579 WP_125820778.1 TerD family protein -
  D1J60_RS09245 (D1J60_09245) uvrB 1969703..1971844 (-) 2142 WP_125820779.1 excinuclease ABC subunit UvrB Machinery gene
  D1J60_RS09250 (D1J60_09250) - 1972092..1972994 (+) 903 WP_125604095.1 glycerophosphodiester phosphodiesterase family protein -
  D1J60_RS09255 (D1J60_09255) - 1973060..1973623 (+) 564 WP_125820780.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  D1J60_RS09260 (D1J60_09260) - 1973790..1975115 (+) 1326 WP_125603376.1 MFS transporter -
  D1J60_RS09265 (D1J60_09265) - 1975105..1975479 (-) 375 WP_125603377.1 cupin domain-containing protein -
  D1J60_RS09270 (D1J60_09270) - 1975553..1976338 (-) 786 WP_125820781.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 79884.02 Da        Isoelectric Point: 4.9632

>NTDB_id=288978 D1J60_RS09245 WP_125820779.1 1969703..1971844(-) (uvrB) [Streptomyces sp. W1SF4]
MRPVSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVRLKVGEEVDRDQLLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRELYVFPASHYVAGPERMEKAITGIEAELAGRLAELEKQGKMLEAQRLRMRTTYDLEMMRQIGSCSGIENYSLH
MDGRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLERVGQTVYL
SATPGKYELSRSDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRGRVEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKMTPAMEKAIDETNRRREKQIAYNTANGIDPQPLRKKINDIVATIAREELDTEELLGTGYRQAKDGKAAKAPVPALGG
KAAAVAKGKGGKTAKAAVVTDRPAAELAALIEQMTERMRGAAAELQFEVAARIRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=288978 D1J60_RS09245 WP_125820779.1 1969703..1971844(-) (uvrB) [Streptomyces sp. W1SF4]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCACCCTTTGAGGTCGTCAGCCCGTACCAGCCCAGCGGTGACCAGCC
GGCGGCCATCGCCGAGCTGGAGAAGCGCATCCGCGCAGGTGAGAAGGACGTCGTACTGCTCGGCGCGACCGGTACGGGCA
AGTCCGCCACCACGGCGTGGATGATCGAGAAGCTCCAGCGGCCCACCCTGGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTACCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCGACCAACTCGCTGCTGACCCGGCGCGACGTGATCGTCGTCGCCTCCGTGTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGGATGGTCCGCCTCAAGGTGGGCGAGGAGGTCGACCGGGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACCCGCAACGACCTGGCCTTCACGCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACCCTGCACCCGCTGACCGGC
GAGGTCATCAGCGAGGACCGCGAGCTCTACGTCTTCCCCGCCAGCCACTACGTCGCCGGCCCCGAGCGCATGGAGAAGGC
GATCACCGGCATCGAGGCCGAGCTCGCCGGGCGGCTCGCGGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGGC
TGCGCATGCGCACCACCTACGACCTGGAGATGATGCGCCAGATCGGGTCCTGCTCCGGCATCGAGAACTACTCGCTGCAC
ATGGACGGCCGCGAGCGCGGCTCGGCCCCGAACACCCTGATCGACTACTTCCCCGAGGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCGCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCCGCGCTCGACAACCGGCCGCTGAAGTGGGAGGAGTTCCTCGAGCGGGTCGGCCAGACCGTCTACCTG
TCGGCCACCCCCGGCAAGTACGAGCTCTCCCGCTCCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAGGTCGTGGTCAAGCCCACCGAGGGCCAGATCGACGACCTCGTCCACGAGATCCGGGGCCGCGTGGAGAAGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACGCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGGGCCGGCGAGTACGACGTACT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCGCTCGTGGCGATCCTCGACGCCGACAAGGAGG
GTTTCCTGCGCTCGGGGACCTCCCTCATCCAGACCATCGGCCGTGCCGCCCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCGGACAAGATGACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGGCGCCGCGAGAAGCAGATCGCCTACAACAC
GGCCAACGGGATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCCACCATCGCCCGCGAGGAGCTGGACA
CCGAGGAGCTCCTCGGCACCGGCTACCGGCAGGCCAAGGACGGCAAGGCCGCCAAGGCGCCGGTCCCCGCGCTCGGCGGC
AAGGCCGCGGCCGTCGCCAAGGGCAAGGGCGGCAAGACGGCCAAGGCCGCCGTCGTGACCGACCGGCCCGCCGCCGAACT
GGCCGCGCTCATCGAGCAGATGACCGAGCGGATGAGGGGAGCGGCCGCCGAGCTCCAGTTCGAGGTCGCCGCCCGGATCA
GGGACGAGGTGGGCGAGCTGAAGAAGGAGCTTCGCCAGATGAGGGAAGCGGGCCTCGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(168-257)

Helicase conserved C-terminal domain (Helicase_C)

(448-551)

Type III restriction enzyme, res subunit (ResIII)

(25-145)

UvrB/uvrC motif (UVR)

(670-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.329

96.634

0.554
  uvrB Streptococcus pneumoniae R6

57.329

96.634

0.554
  uvrB Streptococcus pneumoniae D39

57.329

96.634

0.554

Multiple sequence alignment