Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DBK22_RS02905 Genome accession   NZ_CP028961
Coordinates   535786..536070 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 530786..541070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS02885 (DBK22_00586) - 532029..532937 (+) 909 WP_160241942.1 ketopantoate reductase family protein -
  DBK22_RS02890 (DBK22_00587) - 532969..534201 (-) 1233 WP_007409644.1 aminopeptidase -
  DBK22_RS02895 (DBK22_00588) - 534302..534436 (-) 135 WP_003154559.1 protein YkpC -
  DBK22_RS02900 (DBK22_00589) mreBH 534508..535515 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  DBK22_RS02905 (DBK22_00590) abrB 535786..536070 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DBK22_RS02910 (DBK22_00591) - 536243..537547 (+) 1305 WP_032874761.1 ATP-binding protein -
  DBK22_RS02915 (DBK22_00592) - 537549..538376 (+) 828 WP_038463814.1 gamma-glutamylcyclotransferase -
  DBK22_RS02920 (DBK22_00593) ktrC 538417..539082 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  DBK22_RS02925 (DBK22_00594) ade 539230..540963 (+) 1734 WP_012117460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=288973 DBK22_RS02905 WP_003154557.1 535786..536070(+) (abrB) [Bacillus velezensis strain SRCM102752]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=288973 DBK22_RS02905 WP_003154557.1 535786..536070(+) (abrB) [Bacillus velezensis strain SRCM102752]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATCGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment