Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM388_RS10705 Genome accession   NZ_CP028953
Coordinates   2096531..2097127 (-) Length   198 a.a.
NCBI ID   WP_068815217.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain AR_0141     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2091531..2102127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM388_RS10690 (AM388_10685) helD 2091739..2093793 (-) 2055 WP_068815215.1 DNA helicase IV -
  AM388_RS10695 (AM388_10690) - 2093918..2094364 (+) 447 WP_021312905.1 YccF domain-containing protein -
  AM388_RS10700 (AM388_10695) yccS 2094382..2096517 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AM388_RS10705 (AM388_10700) sxy/tfoX 2096531..2097127 (-) 597 WP_068815217.1 TfoX/Sxy family DNA transformation protein Regulator
  AM388_RS10715 (AM388_10710) sulA 2097476..2097985 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AM388_RS10720 (AM388_10715) ompA 2098338..2099408 (+) 1071 WP_002898408.1 porin OmpA -
  AM388_RS10725 (AM388_10720) matP 2099540..2099992 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AM388_RS10730 (AM388_10725) - 2100178..2101935 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22532.16 Da        Isoelectric Point: 10.0350

>NTDB_id=288880 AM388_RS10705 WP_068815217.1 2096531..2097127(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0141]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLLNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=288880 AM388_RS10705 WP_068815217.1 2096531..2097127(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0141]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACTCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment