Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   DBX26_RS19365 Genome accession   NZ_CP028944
Coordinates   818650..819747 (-) Length   365 a.a.
NCBI ID   WP_065300812.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 813650..824747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS19350 (DBX26_19325) - 814355..815413 (-) 1059 WP_014233774.1 HlyD family secretion protein -
  DBX26_RS19355 (DBX26_19330) - 815447..815902 (-) 456 WP_014233773.1 MarR family transcriptional regulator -
  DBX26_RS19360 (DBX26_19335) luxQ 816077..818650 (-) 2574 WP_118120634.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  DBX26_RS19365 (DBX26_19340) luxP 818650..819747 (-) 1098 WP_065300812.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  DBX26_RS19370 (DBX26_19345) - 820043..820357 (-) 315 WP_014233770.1 GIY-YIG nuclease family protein -
  DBX26_RS19375 (DBX26_19350) - 820357..821001 (-) 645 WP_014233769.1 YceH family protein -
  DBX26_RS19380 (DBX26_19355) - 821159..821374 (-) 216 WP_024373000.1 hypothetical protein -
  DBX26_RS19385 (DBX26_19360) - 821754..822068 (+) 315 WP_014233767.1 DUF496 family protein -
  DBX26_RS19390 (DBX26_19365) - 822201..823538 (+) 1338 WP_118120635.1 MATE family efflux transporter -
  DBX26_RS19395 (DBX26_19370) - 823630..824613 (-) 984 WP_118120636.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41606.92 Da        Isoelectric Point: 5.1880

>NTDB_id=288759 DBX26_RS19365 WP_065300812.1 818650..819747(-) (luxP) [Vibrio sp. dhg]
MKKELIFSLVLVAGIAPAAHPSQVLNGYWEYQEFLKEFPEQKQLTNALAEAVREKPIPVTSDKKRELKISVVYPGQQISD
YWIRNIDAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFIEHVLDSKKTKLILQNI
TTPVRDWDKHQPFLYVGFDHAEGSRKLAKEFSQRFPQNTHYSVLYFSEGYISDVRGNTFINQVNRDSNFELQSAYYTKAT
KQSGYEAAKASLDKYPDVDFIYACSTDVALGAVEALAELGRDDIMINGWGGGSAELDAILDGELDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDYEVVTTSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=288759 DBX26_RS19365 WP_065300812.1 818650..819747(-) (luxP) [Vibrio sp. dhg]
ATGAAAAAAGAGTTAATATTCTCCCTTGTATTAGTAGCTGGTATTGCCCCAGCAGCACATCCATCGCAAGTCCTGAATGG
ATATTGGGAATATCAAGAGTTTCTGAAAGAATTTCCGGAGCAAAAGCAACTAACCAACGCACTGGCTGAAGCTGTCAGAG
AAAAACCGATTCCGGTGACTAGCGATAAAAAGCGTGAACTGAAGATTTCTGTCGTTTACCCAGGGCAGCAAATCTCAGAT
TACTGGATCAGAAACATAGATGCTTTTGAAAAACGGTTAGATAAGCTAAATATTAACTATCAGCTCAATCAGGTTTTTAC
CCGTCCAAACGCCGATATCAAACAGCAAAGTCTGTCTTTAATGGAGGCTTTGAAAAGCAACTCGGACTATCTCATCTTTA
CGCTCGATACCACCAGACATCGCAAATTTATTGAGCATGTCTTAGATTCGAAGAAAACCAAACTGATCTTACAAAACATT
ACGACACCAGTAAGAGATTGGGATAAACATCAGCCGTTTCTTTATGTTGGTTTTGACCATGCTGAAGGCAGCAGAAAACT
GGCGAAAGAGTTTAGTCAACGCTTCCCCCAAAACACTCACTACAGTGTGCTTTACTTTTCAGAAGGCTACATCAGTGATG
TAAGAGGGAACACATTTATTAACCAGGTAAACCGTGACAGCAACTTTGAGCTACAATCTGCATATTACACCAAGGCGACA
AAGCAGTCTGGGTATGAGGCGGCAAAAGCCAGTCTGGACAAGTACCCTGATGTCGACTTTATTTATGCTTGCTCAACCGA
TGTCGCTCTTGGTGCCGTTGAAGCGCTAGCAGAACTCGGGCGCGATGATATTATGATTAATGGCTGGGGAGGAGGCTCTG
CAGAGCTAGACGCCATTTTAGATGGAGAGTTGGATATAACCGTCATGCGTATGAACGACGATACTGGTATTGCGATGGCA
GAAGCCATAAAGTGGGATCTGGAAGGGAAGTCAGTACCAACTGTATATTCTGGTGACTATGAAGTCGTCACCACATCAGA
TTCTCCCGAAAGAATAGAAGCCTTAAGAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment