Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D8X56_RS00635 Genome accession   NZ_CP034314
Coordinates   111361..111828 (-) Length   155 a.a.
NCBI ID   WP_164503962.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 106361..116828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS00620 (D8X56_00620) - 106787..107551 (-) 765 WP_125301339.1 glycosyltransferase family 2 protein -
  D8X56_RS00625 (D8X56_00625) tlpB 107582..109279 (-) 1698 WP_125301341.1 methyl-accepting chemotaxis protein TlpB -
  D8X56_RS00630 (D8X56_00630) - 109483..111228 (-) 1746 WP_125303653.1 5'-nucleotidase C-terminal domain-containing protein -
  D8X56_RS00635 (D8X56_00635) luxS 111361..111828 (-) 468 WP_164503962.1 S-ribosylhomocysteine lyase Regulator
  D8X56_RS00640 (D8X56_00640) - 111858..113000 (-) 1143 WP_125301343.1 cystathionine gamma-synthase -
  D8X56_RS00645 (D8X56_00645) - 113021..113938 (-) 918 WP_164503963.1 O-acetylserine-dependent cystathionine beta-synthase -
  D8X56_RS00650 (D8X56_00650) - 114051..114629 (+) 579 WP_125301347.1 hypothetical protein -
  D8X56_RS00655 (D8X56_00655) dnaK 114863..116725 (-) 1863 WP_125301349.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17623.16 Da        Isoelectric Point: 7.4754

>NTDB_id=288743 D8X56_RS00635 WP_164503962.1 111361..111828(-) (luxS) [Helicobacter pylori strain HP42K]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLARAFLGKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=288743 D8X56_RS00635 WP_164503962.1 111361..111828(-) (luxS) [Helicobacter pylori strain HP42K]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCCGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACGGAGGTTTTAGAGGTTTTAGAAAAGAC
AATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCCAAGAATTTAGCGCGTGCTTTTTTAGGCAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

43.262

90.968

0.394

Multiple sequence alignment