Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   DBX26_RS12815 Genome accession   NZ_CP028943
Coordinates   2770985..2772091 (-) Length   368 a.a.
NCBI ID   WP_014233031.1    Uniprot ID   A0AAN0Y4F4
Organism   Vibrio sp. dhg     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2765985..2777091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS12780 (DBX26_12770) - 2766349..2766846 (+) 498 WP_020333994.1 SprT family zinc-dependent metalloprotease -
  DBX26_RS12785 (DBX26_12775) endA 2766978..2767673 (+) 696 WP_065297391.1 deoxyribonuclease I -
  DBX26_RS12790 (DBX26_12780) rsmE 2767813..2768544 (+) 732 WP_118119390.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DBX26_RS12795 (DBX26_12785) gshB 2768559..2769509 (+) 951 WP_014233028.1 glutathione synthase -
  DBX26_RS12805 (DBX26_12795) - 2769889..2770452 (+) 564 WP_014233029.1 YqgE/AlgH family protein -
  DBX26_RS12810 (DBX26_12800) ruvX 2770494..2770919 (+) 426 WP_014233030.1 Holliday junction resolvase RuvX -
  DBX26_RS12815 (DBX26_12805) pilU 2770985..2772091 (-) 1107 WP_014233031.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  DBX26_RS12820 (DBX26_12810) pilT 2772122..2773162 (-) 1041 WP_014233032.1 type IV pilus twitching motility protein PilT Machinery gene
  DBX26_RS12825 (DBX26_12815) - 2773191..2773904 (+) 714 WP_118119392.1 YggS family pyridoxal phosphate-dependent enzyme -
  DBX26_RS12830 (DBX26_12820) proC 2774027..2774845 (+) 819 WP_118119394.1 pyrroline-5-carboxylate reductase -
  DBX26_RS12835 (DBX26_12825) - 2774898..2775455 (+) 558 WP_014233035.1 YggT family protein -
  DBX26_RS12840 (DBX26_12830) yggU 2775455..2775745 (+) 291 WP_118119396.1 DUF167 family protein YggU -
  DBX26_RS12845 (DBX26_12835) - 2775820..2776251 (+) 432 WP_020334002.1 DUF4426 domain-containing protein -
  DBX26_RS12850 (DBX26_12840) - 2776385..2776987 (+) 603 WP_118119398.1 XTP/dITP diphosphatase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41300.35 Da        Isoelectric Point: 6.2478

>NTDB_id=288743 DBX26_RS12815 WP_014233031.1 2770985..2772091(-) (pilU) [Vibrio sp. dhg]
MDLNKFLEGMLALQASDLYITVGAPILFRVDGELRPQGDKLTENDVAQLLDNAMDPERRQEFRKSRESNFAIVRDCGRFR
VSAFFQRELPGAVIRRIETDIPTFEQLKLPLVLQDLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNSNKTGHILTVEDPI
EFVHEHQRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKDQKEQFLFDLSMNLKGVVGQQLIRDKSGQGRHGVFEILLNSPRVSDLIRRGDLHELKSTMARSNEFGMLTFDQSLY
KLVMQGKISEEDALHSADSANDLRLMLKTQRGEPLATGSLANVKIDMD

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=288743 DBX26_RS12815 WP_014233031.1 2770985..2772091(-) (pilU) [Vibrio sp. dhg]
ATGGATCTGAATAAATTTCTTGAAGGTATGCTGGCGCTGCAAGCGTCGGATCTTTATATCACGGTCGGTGCGCCGATTTT
GTTTCGTGTCGACGGCGAGTTACGTCCGCAAGGTGACAAGCTGACAGAAAATGATGTGGCGCAGTTGTTGGATAATGCAA
TGGATCCTGAGCGTCGACAGGAGTTTCGAAAAAGTCGAGAGTCTAACTTTGCTATCGTCAGAGACTGTGGTCGATTCCGT
GTCAGTGCCTTTTTCCAGCGAGAATTGCCGGGCGCGGTTATTCGCCGTATTGAGACCGACATCCCTACCTTTGAGCAGCT
CAAACTGCCTCTGGTGTTGCAAGATTTAGCGATAGCCAAGCGAGGTCTGGTGCTGGTGGTTGGTGCGACTGGCTCTGGTA
AGTCGACCACAATGGCGGCGATGACAGGCTACCGAAACAGTAATAAGACCGGGCATATCCTGACGGTAGAAGATCCGATA
GAATTTGTTCATGAACACCAGCGTTGTATCGTAACCCAGCGTGAAGTCGGTTTAGACACAGAAAGCTACGAAGTGGCACT
GAAAAACTCCCTGCGACAGGCTCCGGATATGATTCTGATCGGCGAAATCCGCAGTAGAGAGACCATGGAGTATGCGATGA
CCTTTGCTGAAACCGGGCATTTGTGTATGGCGACTCTCCATGCTAACAACGCCAACCAGGCATTAGAGCGGATTCTGCAT
TTAGTACCTAAAGATCAAAAAGAGCAGTTCTTGTTTGATCTGTCTATGAACTTAAAAGGCGTGGTTGGTCAGCAGCTGAT
CCGCGATAAAAGTGGGCAGGGGCGTCATGGCGTGTTTGAGATCCTGCTGAACAGCCCGCGTGTTTCGGATTTAATCCGTC
GTGGCGATCTGCATGAACTTAAGTCGACGATGGCTCGTTCAAACGAGTTTGGTATGCTGACCTTTGACCAGTCGCTCTAC
AAGTTAGTGATGCAAGGCAAAATCAGTGAAGAAGATGCACTGCACAGTGCAGATTCGGCAAATGACCTGCGTCTCATGCT
GAAAACTCAGCGCGGTGAGCCTCTGGCAACAGGAAGCTTGGCGAACGTTAAGATTGATATGGACTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(14-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

81.522

100

0.815
  pilU Pseudomonas stutzeri DSM 10701

58.571

95.109

0.557
  pilU Acinetobacter baylyi ADP1

54.986

95.38

0.524
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44

88.315

0.389
  pilT Legionella pneumophila strain ERS1305867

41.593

92.12

0.383
  pilT Legionella pneumophila strain Lp02

41.593

92.12

0.383
  pilT Acinetobacter baylyi ADP1

40.988

93.478

0.383
  pilT Acinetobacter baumannii D1279779

41.298

92.12

0.38
  pilT Acinetobacter baumannii strain A118

41.298

92.12

0.38
  pilT Acinetobacter nosocomialis M2

41.298

92.12

0.38
  pilT Pseudomonas aeruginosa PAK

41.298

92.12

0.38
  pilT Pseudomonas stutzeri DSM 10701

40.351

92.935

0.375
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.018

90.761

0.372
  pilT Vibrio cholerae strain A1552

41.018

90.761

0.372

Multiple sequence alignment