Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DBX26_RS12390 Genome accession   NZ_CP028943
Coordinates   2692787..2693305 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio sp. dhg     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2687787..2698305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS12365 (DBX26_12355) rimM 2687869..2688417 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  DBX26_RS12370 (DBX26_12360) rpsP 2688448..2688696 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  DBX26_RS12375 (DBX26_12365) ffh 2688905..2690287 (-) 1383 WP_014232959.1 signal recognition particle protein -
  DBX26_RS12380 (DBX26_12370) - 2690512..2691306 (+) 795 WP_014232960.1 inner membrane protein YpjD -
  DBX26_RS12385 (DBX26_12375) - 2691425..2692702 (+) 1278 WP_014232961.1 HlyC/CorC family transporter -
  DBX26_RS12390 (DBX26_12380) luxS 2692787..2693305 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  DBX26_RS12395 (DBX26_12385) - 2693375..2693980 (-) 606 WP_174234193.1 hypothetical protein -
  DBX26_RS12400 (DBX26_12390) gshA 2694005..2695573 (-) 1569 WP_020333954.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=288738 DBX26_RS12390 WP_014232962.1 2692787..2693305(-) (luxS) [Vibrio sp. dhg]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=288738 DBX26_RS12390 WP_014232962.1 2692787..2693305(-) (luxS) [Vibrio sp. dhg]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCCGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCACCA
ATGGGATGTCGTACTGGCTTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAGCAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGTCAGAACAAAATCCCTGAGCTAAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGATGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAACTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment