Detailed information NTG0288733

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: DBX26_RS12100
• Genome accession: NZ_CP028943
• Coordinates: 2619350..2622736 (+)
• Length: 1128 a.a.
• NCBI ID: WP_118119315.1
• Uniprot ID: -
• Organism: Vibrio sp. dhg
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2614350..2627736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBX26_RS12075 (DBX26_12065)	erpA	2614717..2615058 (-)	342	WP_014232903.1	iron-sulfur cluster insertion protein ErpA	-
DBX26_RS12080 (DBX26_12070)	hemL	2615301..2616596 (+)	1296	WP_014232904.1	glutamate-1-semialdehyde 2,1-aminomutase	-
DBX26_RS12085 (DBX26_12075)	-	2616936..2618021 (+)	1086	WP_065297340.1	AI-2E family transporter	-
DBX26_RS12090 (DBX26_12080)	rsmC	2618098..2619123 (+)	1026	WP_118119313.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
DBX26_RS12100 (DBX26_12090)	chiS	2619350..2622736 (+)	3387	WP_118119315.1	response regulator	Regulator
DBX26_RS12105 (DBX26_12095)	-	2623612..2625294 (+)	1683	WP_014232909.1	ABC transporter substrate-binding protein	-
DBX26_RS12110 (DBX26_12100)	-	2625466..2626452 (+)	987	WP_065300163.1	ABC transporter permease	-
DBX26_RS12115 (DBX26_12105)	-	2626455..2627480 (+)	1026	WP_014232911.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127462.18 Da
• Isoelectric Point: 5.6500

>NTDB_id=288733 DBX26_RS12100 WP_118119315.1 2619350..2622736(+) (chiS) [Vibrio sp. dhg]
MFKFYKKQKFKRLQSTLMTAFLVLSLTPLTITALFFLQSHSQDLQEQSTSHLLSVRDTKQQQIVDYFEARETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEESRQNAQQRYIEGSGDQTKTSILPESSNFVGSERYRLLHKRYHWAYSELLKRSDF
NDILLVDINGNVTYSIKKDDNYGTNLLTGRYKDAALGRAFQRLANDVSERRKVNEDYTPILISDFELENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLVADKNRESSIETLLVGGDQQPRTINTKLDDIQNSMEVITQALSGQTSVGTYTNGLDEA
IIAAYTPVKTRGVNWALVVQLPEKDAFSRIHQLEKLFVIAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
NTFDTVRKDEIGRLAISFERMQRSIREKIQTIKKQNEELESNIRLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLISGANGTIPANQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVNLASSTRLVLELSGHLLGNKTIRI
INQVPNDLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISAGVVDDLVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDES
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEILATQTQVACGHFQVPEINLENTDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCNELRQTFDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIRAHLTASKAEMRHIENKVLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRVRFANEAACKLFKRSLEQIKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPKGS
GLDVMYIFNVGGGANTARIHNLETAVEVLSRYAFDGDKEQLQKLKELGGEFTRLADKALGNKKDKQEVMREVLVEAMTHA
LEYWESVTGESKFTFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=288733 DBX26_RS12100 WP_118119315.1 2619350..2622736(+) (chiS) [Vibrio sp. dhg]
ATGTTCAAATTCTACAAAAAACAGAAGTTTAAGCGTCTACAAAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCCTTAC
GCCTCTAACCATTACCGCGCTTTTTTTCCTGCAGTCACACAGTCAAGATCTGCAAGAACAGAGCACGTCACACCTGTTGT
CTGTAAGAGATACCAAACAGCAGCAAATAGTTGACTATTTTGAAGCACGCGAAACCGAAGTAATGGGCTTTGTCCGTTCG
GAGTTAGCTTATGCCAGCGGTGGGCGCTTTTATGGTTTAGTCAATGCGTTCAGTCGCTTAGGAAATGACATTGAAGAGTC
ACGTCAAAATGCACAGCAACGTTATATTGAAGGCAGTGGCGATCAGACAAAAACGTCAATCTTGCCGGAGTCATCTAACT
TTGTCGGGAGTGAGCGTTATCGCCTGTTACACAAGCGCTATCATTGGGCTTATTCAGAACTTCTAAAACGCTCTGACTTC
AATGACATACTTTTAGTCGATATCAACGGTAACGTTACTTACTCAATCAAAAAAGACGACAATTACGGCACTAATCTTCT
CACTGGCCGCTATAAAGATGCTGCGCTAGGTAGAGCGTTTCAGCGCTTGGCCAATGATGTCAGCGAGCGCCGTAAAGTAA
ACGAAGACTATACTCCAATCCTTATCTCTGACTTTGAACTTGAAAATGGCAAGCAAGTCGCGTGGCTTGGCGCCCCTATC
GTTCAACAAGGATACCTCCACAGCTATGCCATGTTCCGATTACCAAATAATGGCATCACTAAACTAGTCGCAGACAAAAA
CCGCGAGTCATCGATTGAGACGCTATTAGTCGGAGGAGATCAACAACCTCGAACCATTAACACCAAGCTAGATGATATCC
AAAACAGTATGGAGGTCATCACTCAGGCACTTTCAGGTCAAACTAGCGTAGGTACTTATACAAACGGGCTCGATGAAGCC
ATTATCGCCGCCTATACGCCAGTTAAAACCCGTGGTGTTAATTGGGCGTTGGTCGTGCAGTTACCAGAAAAAGACGCCTT
TTCTCGCATTCACCAGCTGGAAAAACTCTTCGTCATTGCGATGCTTACGGCGATCATACTGGTTGTGATTGCCTCGCACT
ATTTATCGAATTTCATCACCTCGCCACTGCTTAAATTGACCTGGGCGGCAGAGCGAGTATCAGCAGGCGATCTGGACGAA
AACACATTTGATACTGTTAGAAAAGACGAAATTGGTCGCTTAGCCATCAGTTTTGAGCGCATGCAACGTTCCATTCGTGA
AAAAATTCAGACTATCAAGAAGCAAAATGAAGAGCTGGAAAGCAACATCCGCTTAATTCAAAAACAAAATGACGAGCTGC
AACTGGCAGACAAGCTAAAAGATGAATTTCTGGCAACGACCTCTCATGAACTGCGTACGCCTTTGCACGGCATGGTCGGT
ATTGCAGAAACCTTGATATCCGGAGCCAACGGTACAATTCCGGCAAACCAGAAGTATCAGCTTGATATAATTATTAAAAG
TGGCCAACGTTTGGCTAACCTGGTCGACGACTTACTGGATTACCATAAAATGCGATACGGTAGCATGGACATCCAGAAGT
CGGCTGTTAACCTGGCAAGTTCAACCCGATTGGTGCTGGAATTGTCGGGTCATTTACTTGGAAACAAGACCATTCGAATC
ATCAATCAAGTACCTAATGATCTCAAAGCAGTCTCAGCGGACCCACAACGACTTGAACAGGTGCTTTACAATCTGATAGG
AAACGCAATTAAGTACACCTCTGAAGGTAAGATCGTTATTTCTGCAGGAGTCGTAGACGATTTAGTTCGCGTTCAAGTGG
TCGATACCGGACAAGGTATTCCTGCTGAGCACCTTGAGCACATCTTTGAGCCTTTAATTCAGGCAGGACAGGATGAAAGT
CGCTATCGTCAAGGTGCGGGGTTAGGTTTATCAATTAGCCGCCAGTTGATTGAGCTAATGGGAGGCTCCTTATATGTCAG
CAGCCAACCTATGGTAGGGACCACATTCAGCTTCACTCTGCCTCTCGCCAGTGAAGAAGAGATCCTAGCAACACAGACGC
AGGTAGCCTGTGGGCACTTCCAGGTTCCAGAAATTAACCTTGAGAACACAGACGACCTATCGCTACCAGAAAACCCAGAT
GGTCCGCTACTTTATGTAGCAGACGATGAACCAGTCAACCTACGAGTACTTGAAAGCTTTTTACGCTTAGAAGGCTATCG
TGTAAGAACCGTTTCAGATGGCCCTGAAACACTTGCTCTTGTCGAGCAAGAAAAGCCGGAACTGCTGCTGCTCGATATCA
TGATGCCAGGAATGAGTGGCTATCAAGTATGTAATGAATTGCGTCAAACCTTTGATCATGCTGAGCTGCCAATCATTATG
CTAACCGCCTTAAGTCAAACGGAAGACCGAGTTAGAGGCTTTGAAGCCGGAGCAAACGATTATTTGTCGAAGCCTTTTAA
CAAACAAGAGCTTGCAGCCAGAATTAGAGCTCATTTGACCGCAAGTAAAGCAGAGATGCGCCATATTGAGAATAAAGTAC
TTGAGTCGGAACTTCGTCAACGAGCTGAAGTAGAAGCGAGCTTGCTTGAAACTCAGGGGCGTCTGCTAGAGCAGCTTGAG
TCCGCTCCTGAGGCGATTATTTGCTTGCGCGAAGATCAACGTGTTCGTTTTGCCAACGAAGCCGCATGTAAGCTGTTTAA
ACGTAGCTTAGAGCAAATTAAACGTTCGTCTGCCGATGAGCTGATTGCTCCAAAATTTCTGACCGTTAAGCAGCCACATT
ATTGCGGGAAAATTGATATTTATATCGAGGACATTCGCCAAAATATTGAAGCGGACATCCTTAAGCTTCCAAAAGGTTCC
GGCCTAGACGTTATGTACATATTTAATGTCGGTGGCGGCGCAAATACAGCGCGCATTCACAACCTGGAAACGGCAGTGGA
GGTACTTTCTCGCTATGCCTTTGACGGCGACAAAGAACAGCTACAGAAGCTTAAAGAGCTTGGAGGCGAGTTCACTCGAC
TGGCAGACAAAGCATTAGGCAATAAAAAAGACAAACAGGAAGTTATGCGTGAAGTACTGGTCGAAGCGATGACACATGCT
TTGGAATACTGGGAGTCTGTCACTGGAGAAAGTAAGTTTACCTTTGCCGAGCAAAGTGGTCTTTGGCGCGTTTACCTTGA
TAGAAGTACGCTACAAACCCGTACTCTAGATAAATACATGCGCATTGAAACCTTACCTAAAACTCCGCGCTGGAGAACGG
TTTTAAGCTCTATCGAGTTCATCCTTGAGCACTGTAAAGAACAAAGTCCGGAGCGTGCTTACATTGAAGCGCAGCGTGAC
AAGCTGCAAAGGTTACTTACCAGCTAG

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (726-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	75.376	100	0.754