Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC68_RS15905 Genome accession   NZ_CP034305
Coordinates   3186498..3186971 (+) Length   157 a.a.
NCBI ID   WP_053317965.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20151116002-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3181498..3191971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC68_RS15875 (EHC68_16130) cytR 3181569..3182576 (+) 1008 WP_005481416.1 DNA-binding transcriptional regulator CytR Regulator
  EHC68_RS15880 (EHC68_16135) ftsN 3182753..3183298 (+) 546 WP_005481405.1 cell division protein FtsN -
  EHC68_RS15885 (EHC68_16140) hslV 3183463..3184014 (+) 552 WP_108744571.1 ATP-dependent protease subunit HslV -
  EHC68_RS15890 (EHC68_16145) hslU 3184038..3185369 (+) 1332 WP_108744572.1 HslU--HslV peptidase ATPase subunit -
  EHC68_RS15895 (EHC68_16150) - 3185794..3186018 (-) 225 WP_029864913.1 hypothetical protein -
  EHC68_RS15900 (EHC68_16155) - 3186178..3186327 (-) 150 WP_108744573.1 AlpA family phage regulatory protein -
  EHC68_RS15905 (EHC68_16160) radC 3186498..3186971 (+) 474 WP_053317965.1 RadC family protein Machinery gene
  EHC68_RS15910 (EHC68_16165) - 3186968..3187399 (+) 432 WP_029864910.1 DUF2787 family protein -
  EHC68_RS15915 (EHC68_16170) - 3187514..3188338 (+) 825 WP_053317964.1 YafY family protein -
  EHC68_RS27065 - 3188335..3188649 (+) 315 WP_236576005.1 hypothetical protein -
  EHC68_RS15920 (EHC68_16175) - 3188676..3189497 (+) 822 WP_236576006.1 hypothetical protein -
  EHC68_RS15925 (EHC68_16180) - 3189864..3190520 (-) 657 WP_021451684.1 inovirus Gp2 family protein -
  EHC68_RS15930 (EHC68_16185) - 3190881..3191711 (+) 831 WP_228770439.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17589.05 Da        Isoelectric Point: 7.2351

>NTDB_id=288722 EHC68_RS15905 WP_053317965.1 3186498..3186971(+) (radC) [Vibrio parahaemolyticus strain 20151116002-3]
MSSNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASAEHEVFALLLLDSQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALALVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=288722 EHC68_RS15905 WP_053317965.1 3186498..3186971(+) (radC) [Vibrio parahaemolyticus strain 20151116002-3]
ATGTCGAGCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCTGCTGAAATCCT
AGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCTGAAGCAACCAAAGAGTATGTCCGATTCAAACTAGCCAGCG
CTGAACACGAGGTTTTCGCTCTGCTACTGCTTGATAGCCAACACCGTGTCATCGAATTTAAATCACTCTTTAAAGGCACC
ATTGATTCCGCTAGCGTTTATCCTCGCGAGGTCGTCAAAAGCGTTTTGGAAGTGAATGCAGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCCGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTCATCGACGCTTTAGCGTTAG
TGGATGTCAGGGTGCTTGACCATATCGTTGTCGGAGAAAGCAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.445

87.261

0.414