Detailed information NTG0288720

Bioinformatically predicted

Overview

• Name: priA
• Type: Machinery gene
• Locus tag: EHC68_RS15870
• Genome accession: NZ_CP034305
• Coordinates: 3179032..3181236 (+)
• Length: 734 a.a.
• NCBI ID: WP_108744570.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20151116002-3
• Function: DNA puliing through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3174032..3186236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC68_RS15825 (EHC68_16080)	rplV	3174701..3175033 (-)	333	WP_005383164.1	50S ribosomal protein L22	-
EHC68_RS15830 (EHC68_16085)	rpsS	3175044..3175322 (-)	279	WP_004394525.1	30S ribosomal protein S19	-
EHC68_RS15835 (EHC68_16090)	rplB	3175344..3176168 (-)	825	WP_005489461.1	50S ribosomal protein L2	-
EHC68_RS15840 (EHC68_16095)	rplW	3176184..3176486 (-)	303	WP_031852906.1	50S ribosomal protein L23	-
EHC68_RS15845 (EHC68_16100)	rplD	3176483..3177085 (-)	603	WP_005379556.1	50S ribosomal protein L4	-
EHC68_RS15850 (EHC68_16105)	rplC	3177103..3177732 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
EHC68_RS15855 (EHC68_16110)	rpsJ	3177747..3178058 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
EHC68_RS15860 (EHC68_16115)	rpmE	3178516..3178737 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
EHC68_RS15870 (EHC68_16125)	priA	3179032..3181236 (+)	2205	WP_108744570.1	primosomal protein N'	Machinery gene
EHC68_RS15875 (EHC68_16130)	cytR	3181569..3182576 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
EHC68_RS15880 (EHC68_16135)	ftsN	3182753..3183298 (+)	546	WP_005481405.1	cell division protein FtsN	-
EHC68_RS15885 (EHC68_16140)	hslV	3183463..3184014 (+)	552	WP_108744571.1	ATP-dependent protease subunit HslV	-
EHC68_RS15890 (EHC68_16145)	hslU	3184038..3185369 (+)	1332	WP_108744572.1	HslU--HslV peptidase ATPase subunit	-
EHC68_RS15895 (EHC68_16150)	-	3185794..3186018 (-)	225	WP_029864913.1	hypothetical protein	-

Sequence

Protein

• Length: 734 a.a.
• Molecular weight: 82209.85 Da
• Isoelectric Point: 8.7811

>NTDB_id=288720 EHC68_RS15870 WP_108744570.1 3179032..3181236(+) (priA) [Vibrio parahaemolyticus strain 20151116002-3]
MRPSIARVALPVPLDKQFDYAIPGHLFPIIGGRVSVPFGRQTLVGIVTAMVNHSDFPKDQLKPIKAVLDSQPVWPEKLYS
LLIWCSQFYQYPLGDTLHNAMPAALRKGKPADFATLQEWQITESGKDKLMQGLDRRAVKQQKVLQMLVNGALPHQEFVDQ
EIASTVLKSLEEKGRIERIEKKPVITKWGQHVECDVEKPKLNHEQALAIASVNSQAGFACYLLEGVTGSGKTEVYLNLIK
PVLEKGKQALVLVPEIGLTPQTINRFKRRFNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAPFADLGIIIV
DEEHDTSYKQQDSLRYHARDVAVMRAHKEQVPIVLGSATPALETLHNALSGKYHHLTLTQRAGSAVPTTNKVLDVKGQYL
ESGLSAPLIAEMRKHLKAGNQVMLFLNRRGFSPALMCHECGWVAECKRCDAYYTFHQYSNEIRCHHCGSQQPVIHQCQGC
GSTQLVTVGVGTEQLEQQLAQLFPEYKAIRIDRDSTRRKGSLEDALDSIRKGEYQILIGTQMLAKGHHFPNVTLVALLDV
DGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHSLLQALLEKDYRHFAMTALEERKLAQLPPYSFLTLF
KAEANQSEIVEDFLRQVRFTLESHPLFDDTCMVLGPTPSPLAKRAGKYRWQLLLQTQHRSLMQKLLTSAKPAIELLPNAK
KVRWNLDIEPQDLS

Nucleotide

• Length: 2205 bp

>NTDB_id=288720 EHC68_RS15870 WP_108744570.1 3179032..3181236(+) (priA) [Vibrio parahaemolyticus strain 20151116002-3]
ATGCGTCCATCCATTGCTAGAGTGGCACTGCCCGTACCTCTCGACAAACAATTTGACTATGCCATCCCAGGACACCTGTT
TCCTATCATTGGCGGGCGCGTATCCGTACCTTTTGGACGTCAAACGTTAGTTGGCATCGTCACCGCGATGGTTAATCACT
CGGATTTCCCCAAAGATCAACTCAAGCCAATCAAAGCAGTTCTTGATTCTCAGCCGGTATGGCCTGAAAAGCTTTATTCG
TTGCTGATTTGGTGCAGCCAGTTCTACCAATACCCACTTGGAGATACGCTACACAATGCGATGCCAGCAGCTCTGCGTAA
AGGAAAGCCTGCAGATTTTGCGACGCTACAAGAGTGGCAAATTACCGAATCCGGTAAAGACAAGCTGATGCAAGGGCTTG
ATCGTCGAGCGGTCAAACAACAAAAGGTCTTGCAAATGTTGGTTAACGGCGCTTTGCCTCACCAGGAATTTGTCGACCAA
GAGATAGCCTCAACTGTACTAAAGTCTTTAGAAGAGAAAGGCAGGATTGAACGTATCGAGAAGAAGCCTGTAATCACCAA
GTGGGGGCAGCACGTTGAATGCGACGTCGAGAAGCCAAAGCTCAACCACGAACAAGCGCTAGCTATTGCGAGTGTAAATA
GCCAAGCAGGTTTTGCCTGCTATTTACTAGAAGGCGTCACGGGCTCAGGTAAGACAGAAGTGTACCTCAACCTGATCAAG
CCGGTCTTAGAGAAAGGTAAACAAGCCTTGGTTTTAGTACCAGAGATTGGCTTAACACCACAAACCATCAACCGCTTTAA
ACGCCGTTTTAATGTGCCAGTTGACGTTATCCACTCCGGATTAAACGAGACGGAACGTCTGAATGCGTGGCTTTCTGCAC
GCGACAAAGCGGCCGGAATCATTATCGGCACACGCTCTGCCCTACTCGCGCCTTTTGCTGATCTCGGGATTATCATTGTG
GACGAGGAACATGACACCTCTTACAAACAGCAAGATAGCTTGCGTTATCACGCACGCGATGTTGCTGTAATGCGCGCCCA
TAAAGAACAAGTTCCGATTGTTCTGGGCTCAGCTACACCTGCACTGGAGACATTGCACAATGCCTTGTCAGGCAAGTATC
ACCATTTAACCCTGACCCAACGCGCAGGCTCTGCGGTTCCTACTACTAATAAAGTGCTCGACGTCAAAGGTCAGTATTTA
GAAAGTGGTTTATCTGCCCCATTGATTGCGGAAATGCGCAAACACCTTAAAGCAGGCAATCAAGTGATGCTGTTTCTTAA
CCGTCGTGGTTTCTCCCCTGCTCTCATGTGTCATGAATGTGGTTGGGTTGCCGAATGCAAACGTTGTGATGCTTATTACA
CCTTCCACCAATACAGCAATGAGATTCGCTGCCACCATTGTGGCTCGCAGCAACCAGTGATTCATCAGTGTCAGGGCTGT
GGTTCAACTCAACTGGTTACCGTTGGTGTCGGTACCGAACAGTTAGAACAACAATTGGCACAATTATTTCCCGAATACAA
AGCCATCCGTATCGACAGGGATAGTACGCGCCGCAAAGGTAGCTTAGAAGACGCGTTGGACTCCATCCGCAAGGGTGAAT
ATCAAATTTTAATTGGCACTCAAATGTTAGCTAAGGGACACCATTTCCCCAATGTAACGCTCGTTGCCTTGCTAGATGTT
GATGGCTCTCTATATAGTAGCGACTTTCGCGCCTCCGAAAGATTAGCGCAGCTATTCATTCAGGTCGCAGGGCGAGCCGG
ACGTGCAAGTAAGCCGGGGGAAGTGGTTTTGCAGACTCACCATCCTGAGCACAGTTTGTTGCAAGCCTTATTGGAAAAGG
ACTACCGACACTTCGCTATGACGGCATTAGAGGAACGTAAACTGGCGCAGTTGCCACCGTACAGTTTCCTTACTCTATTT
AAAGCCGAAGCGAATCAGAGCGAGATCGTAGAAGATTTTCTGCGCCAAGTTCGCTTTACCTTAGAATCGCACCCTTTGTT
TGACGACACCTGCATGGTGCTTGGTCCAACACCATCGCCTCTCGCCAAACGCGCAGGCAAATACCGTTGGCAGCTGTTAC
TCCAAACCCAGCACCGTTCATTAATGCAAAAGTTATTAACCAGTGCCAAACCTGCTATTGAGTTGTTGCCTAATGCCAAA
AAAGTTCGCTGGAATTTAGACATAGAACCACAAGATCTCAGCTAG

Domains

Predicted by InterProScan.

• Primosomal protein N C-terminal domain (PriA_C) (633-730)

• DEAD/DEAH box helicase (DEAD) (220-365)

• PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA) (446-472)

• Helicase conserved C-terminal domain (Helicase_C) (500-589)

• 3DNA-binding domain (3BD) (PriA_3primeBD) (7-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
priA	Acinetobacter baumannii D1279779	43.419	100	0.436