Detailed information NTG0288718

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: DBX26_RS01135
• Genome accession: NZ_CP028943
• Coordinates: 242012..243019 (-)
• Length: 335 a.a.
• NCBI ID: WP_118117602.1
• Uniprot ID: -
• Organism: Vibrio sp. dhg
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 237012..248019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBX26_RS01105 (DBX26_01105)	zapB	237138..237380 (+)	243	WP_014230654.1	cell division protein ZapB	-
DBX26_RS01110 (DBX26_01110)	rraA	237454..237996 (-)	543	WP_118117598.1	ribonuclease E activity regulator RraA	-
DBX26_RS01115 (DBX26_01115)	-	238073..238990 (-)	918	WP_118117600.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
DBX26_RS01120 (DBX26_01120)	hslU	239245..240576 (-)	1332	WP_014230657.1	HslU--HslV peptidase ATPase subunit	-
DBX26_RS01125 (DBX26_01125)	hslV	240600..241151 (-)	552	WP_014230658.1	ATP-dependent protease subunit HslV	-
DBX26_RS01130 (DBX26_01130)	-	241305..241850 (-)	546	WP_014230659.1	SPOR domain-containing protein	-
DBX26_RS01135 (DBX26_01135)	cytR	242012..243019 (-)	1008	WP_118117602.1	DNA-binding transcriptional regulator CytR	Regulator
DBX26_RS01140 (DBX26_01140)	priA	243355..245559 (-)	2205	WP_118117604.1	primosomal protein N'	-
DBX26_RS01145 (DBX26_01145)	rpmE	245857..246078 (+)	222	WP_014230662.1	50S ribosomal protein L31	-
DBX26_RS01150 (DBX26_01150)	rpsJ	246537..246848 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
DBX26_RS01155 (DBX26_01155)	rplC	246863..247492 (+)	630	WP_014230663.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36817.24 Da
• Isoelectric Point: 5.9746

>NTDB_id=288718 DBX26_RS01135 WP_118117602.1 242012..243019(-) (cytR) [Vibrio sp. dhg]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAILEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFDGGAKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFCVPQDLSVVGFDDINFAQYSDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSTAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=288718 DBX26_RS01135 WP_118117602.1 242012..243019(-) (cytR) [Vibrio sp. dhg]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACCGCGACGGTATCTCGAGCATTAATGAATCCGGAGAA
AGTCTCCTCTTCAACCAGAAAAAGAGTTGAAGACGCGATACTCGAAGCAGGTTACTCACCAAATTCATTAGCGCGTAATT
TACGACGAAATGAGTCGAAGACGATTGTTACGATCGTTCCTGACATCTGCGACCCTTACTTTTCCGAAATCATCCGTGGT
ATCGAAGATGCAGCGATGGAGCACGGCTACCTGGTTTTACTTGGAGACAGTGGCCAGCAGAAGAAACGCGAAAGCTCATT
CGTAAACTTGGTATTTACAAAGCAAGCAGACGGGATGCTGCTACTTGGTACTGACTTACCGTTTGATGTGAGTAAGCCAG
AGCAGAAAAACCTGCCACCAATGGTCATGGCGTGTGAATTTGCGCCTGAGCTGGAACTGCCAACCGTTCATATCGATAAC
CTGACTTCTGCCTTTGAAGCGGTCAATTATCTGACTCAGCTCGGCCACAAACGTATTGCGCAAATTTCAGGTCCTGATAC
CGCGGTATTGTGCCAATTCCGTCAACAAGGTTACCAGCAAGCACTGCGTCGTGCAGGGATAAATAAAGACCCGCAATACA
GTATTGTCACCGAGTTCTCTTTTGACGGCGGTGCAAAAGCAGTGCGTAAACTGCTGGAACTAGCGGAGCCACCAACCGCG
ATTTTCTGCCACTGTGACACGATGGCAATCGGCGCCATTCAAGAAGCGAAGAAGCTCGGCTTCTGTGTACCACAAGATCT
ATCGGTCGTAGGTTTTGACGACATCAATTTCGCGCAGTACTCTGATCCACCGTTAACGACTATCTCTCAACCTCGCTACG
AGATTGGCCGACAAGCGATGCTAATGATGTTAGAGCTTTTAAAAGGCCACGATGTGCATTCTGGATCTCGTCTTCTGGAG
ACTAACCTGATTGTGCGCGGAAGTACGGCGCCTCCTCAGCGAGCGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	96.418	100	0.964
cytR	Vibrio cholerae C6706	88.024	99.701	0.878