Detailed information NTG0288715

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DCO17_RS09650
• Genome accession: NZ_CP028942
• Coordinates: 1893968..1894858 (+)
• Length: 296 a.a.
• NCBI ID: WP_173956506.1
• Uniprot ID: -
• Organism: Polynucleobacter tropicus strain MWH-UH21B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1888968..1899858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DCO17_RS09620 (DCO17_09570)	pth	1889180..1889770 (+)	591	WP_173956500.1	aminoacyl-tRNA hydrolase	-
DCO17_RS09625 (DCO17_09575)	-	1889774..1890040 (-)	267	WP_173956501.1	YfhL family 4Fe-4S dicluster ferredoxin	-
DCO17_RS09630 (DCO17_09580)	coaD	1890062..1890559 (-)	498	WP_173956502.1	pantetheine-phosphate adenylyltransferase	-
DCO17_RS09635 (DCO17_09585)	rsmD	1890596..1891192 (-)	597	WP_173956503.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DCO17_RS09640 (DCO17_09590)	-	1891203..1892540 (-)	1338	WP_173956504.1	pitrilysin family protein	-
DCO17_RS09645 (DCO17_09595)	-	1892537..1893904 (-)	1368	WP_173956505.1	pitrilysin family protein	-
DCO17_RS09650 (DCO17_09600)	pilA	1893968..1894858 (+)	891	WP_173956506.1	signal recognition particle-docking protein FtsY	Machinery gene
DCO17_RS09655 (DCO17_09605)	rpoH	1894953..1895876 (+)	924	WP_173956507.1	RNA polymerase sigma factor RpoH	-
DCO17_RS09660 (DCO17_09610)	-	1895907..1896497 (-)	591	WP_173956508.1	SCO family protein	-
DCO17_RS09665 (DCO17_09615)	cyoE	1896509..1897402 (-)	894	WP_173956509.1	heme o synthase	-
DCO17_RS09670 (DCO17_09620)	-	1897399..1898502 (-)	1104	WP_173956510.1	heme A synthase	-
DCO17_RS09675 (DCO17_09625)	-	1898502..1899158 (-)	657	WP_173956511.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31432.90 Da
• Isoelectric Point: 6.6981

>NTDB_id=288715 DCO17_RS09650 WP_173956506.1 1893968..1894858(+) (pilA) [Polynucleobacter tropicus strain MWH-UH21B]
MFGLRKTLGSLFKSNQLDDAWFDHLEESLIQSDVGLPTTEQLMAKLRKAAKSEKASSAEELQSLLIQEVASLLQSLETNP
NPLFTSASSHIPEVWLVVGVNGAGKTTTIGKLCKLFQSQDKSVLLAAGDTFRAAARNQLQEWGGRNQVDVITQEGGDAAA
VAHDAIHSAISRKNDILIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTS
IIVTKLDGTAKGGVICALAQTLKEGPKPAILALGKGEGIDDLAPFTAGQYSSELFN

Nucleotide

• Length: 891 bp

>NTDB_id=288715 DCO17_RS09650 WP_173956506.1 1893968..1894858(+) (pilA) [Polynucleobacter tropicus strain MWH-UH21B]
ATGTTTGGATTACGTAAAACCCTAGGATCTCTATTTAAATCAAACCAATTAGATGATGCTTGGTTTGATCATTTAGAAGA
ATCACTTATTCAGAGTGATGTGGGCTTGCCCACGACTGAACAATTGATGGCTAAGTTACGTAAAGCCGCTAAATCGGAAA
AAGCATCTAGCGCTGAAGAGTTGCAATCCTTGCTGATTCAAGAAGTTGCAAGCTTGTTGCAAAGCTTGGAAACCAATCCA
AACCCCTTATTTACAAGCGCCTCAAGCCATATCCCTGAAGTGTGGTTAGTGGTTGGTGTCAATGGCGCAGGCAAAACTAC
TACTATCGGAAAGCTCTGCAAGCTCTTTCAATCTCAAGACAAATCTGTTCTGCTAGCAGCTGGTGATACTTTTAGGGCTG
CTGCACGAAATCAATTGCAAGAATGGGGTGGGCGCAACCAAGTTGATGTTATTACTCAAGAGGGTGGGGATGCGGCGGCT
GTTGCACACGATGCAATCCACTCAGCAATCTCTCGTAAAAATGACATCCTGATTATCGATACCGCAGGTCGCCTTGCCAC
TCAAGATCACCTCATGGAAGAACTCAAGAAGGTTAAAAGGGTTATTGGTAAAGCCCTTCCGGGGGCACCACACCACACGC
TATTAGTTTTAGATGGCAACACAGGACAAAATGGTTTGAGCCAAGTAAAGGCATTTCATGCCGCCTTGGGTCTTACTTCA
ATCATCGTTACCAAGCTCGATGGAACTGCAAAAGGGGGCGTTATTTGCGCCCTTGCCCAAACCCTCAAAGAGGGCCCCAA
ACCGGCAATTTTGGCCCTTGGTAAGGGCGAGGGAATTGATGATTTAGCCCCATTCACAGCAGGGCAATATTCCTCTGAAT
TATTTAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (4-68)

• SRP54-type protein, GTPase domain (SRP54) (92-295)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.877	98.986	0.514