Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DCO17_RS07670 Genome accession   NZ_CP028942
Coordinates   1487845..1489209 (-) Length   454 a.a.
NCBI ID   WP_173956157.1    Uniprot ID   A0A6M9Q7D6
Organism   Polynucleobacter tropicus strain MWH-UH21B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1482845..1494209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO17_RS07655 (DCO17_07600) dapD 1484876..1485703 (+) 828 WP_173956154.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  DCO17_RS07660 (DCO17_07605) dapE 1485734..1486885 (+) 1152 WP_173956155.1 succinyl-diaminopimelate desuccinylase -
  DCO17_RS07665 (DCO17_07610) prmB 1486925..1487821 (+) 897 WP_173956156.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  DCO17_RS07670 (DCO17_07615) radA 1487845..1489209 (-) 1365 WP_173956157.1 DNA repair protein RadA Machinery gene
  DCO17_RS07675 (DCO17_07620) - 1489239..1489730 (-) 492 WP_254598739.1 hypothetical protein -
  DCO17_RS07680 (DCO17_07625) - 1489745..1491586 (-) 1842 WP_254598839.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48296.10 Da        Isoelectric Point: 7.3471

>NTDB_id=288710 DCO17_RS07670 WP_173956157.1 1487845..1489209(-) (radA) [Polynucleobacter tropicus strain MWH-UH21B]
MAKVKTVYICQSCGGTSAKWQGQCPSCQSWNTMEEGLPETTSNSRFQGLAQSLPRQKLSTITAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKASGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLIRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLRVIPVERIDQAIAAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=288710 DCO17_RS07670 WP_173956157.1 1487845..1489209(-) (radA) [Polynucleobacter tropicus strain MWH-UH21B]
TTGGCTAAAGTAAAAACGGTTTATATCTGTCAGTCTTGTGGCGGCACTTCGGCGAAGTGGCAAGGACAATGCCCATCTTG
TCAGTCTTGGAACACGATGGAAGAGGGTTTGCCAGAGACGACATCCAACTCTCGGTTTCAGGGTCTAGCGCAATCTTTGC
CTAGACAAAAGCTCTCGACGATTACCGCTGAAGATTTGCCAAGATTTAGTACTGGTGTAGAAGAGTTTGACCGCGTATTG
GGCGGTGGATTGGTGCCTGGTGGTGTTGTGTTGCTTGGTGGTGATCCCGGCATTGGTAAATCCACTCTGCTATTGCAGGC
GCTTGCTGAGATGAGTGCTGCTGGAATGAATGTTCTCTATAGCAGTGGTGAGGAATCAGCCGCTCAAATTGCTTTGCGTG
CGAAGCGAATTGCATTGGATGCACCACAATTAGAAGTTTTGGCAGAAATTCAGTTGGAGAAGCTGATTTCTATTATGGAC
ACTGTTAAGCCACAAGTCTTGGTTGTGGACTCCATTCAAACTTTGTACTCTGAAGTATTAAGCTCCGCCCCTGGCTCAGT
TGCGCAGGTGAGAGAGTGCGCTGCTCAATTAACCAGAGCGGCTAAAGCCAGCGGCATTTGTGTATTGATGGTGGGCCATG
TCACAAAAGATGGCCATTTGGCGGGCCCAAGGGTGTTGGAGCACATTGTTGATACCGTGTTGTACTTTGAAGGCGATACA
CACTCCTCGTTTCGTTTAATTCGTTCTATTAAGAATCGTTTTGGCGCAGTCAATGAGCTAGGTGTATTTGCAATGACTGA
AAAAGGTTTGCGGGGTGTTACAAACCCATCAGCAATTTTCTTGTCGCAACATGAGCAAATGGTTCCCGGCGCATGTGTGT
TGGTTACGCAAGAGGGTAGTAGACCTCTCTTAGTTGAGATTCAAGCGCTTGTTGATACTGCCCATGTGCCTAATCCTCGC
CGCTTAGCCGTTGGTTTGGAGCAGGCACGTTTAGCTATGTTGTTAGCGGTCTTGCACCGTCATGCTGGAGTAGCCTGTTT
TGATCAGGATGTGTTCTTGAATGCCGTTGGCGGCGTGAAGATTTCAGAGCCAGCTGCTGACTTGGCAGTGTTACTTGCGA
TTCAATCATCTATTCGTAATCGCGCATTACCAAAAGAGTTAATTGTGTTTGGTGAAGTGGGCTTAGCGGGAGAGATTCGT
CCATGCCCACGCGGTCAAGAGCGTCTTAAGGAGGCGGCAAAGCTGGGTTTCACAGTCGCCATTATTCCTAAGGCAAATAT
GCCAAAGACGAAAATCCCCGGATTAAGAGTGATTCCTGTAGAGCGAATTGATCAGGCGATAGCTGCAGCGGCCGAGTTAA
GCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(79-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9Q7D6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

99.559

0.491
  radA Streptococcus pneumoniae Rx1

46

99.119

0.456
  radA Streptococcus pneumoniae D39

46

99.119

0.456
  radA Streptococcus pneumoniae R6

46

99.119

0.456
  radA Streptococcus pneumoniae TIGR4

46

99.119

0.456
  radA Streptococcus mitis NCTC 12261

46

99.119

0.456
  radA Streptococcus mitis SK321

46

99.119

0.456

Multiple sequence alignment