Detailed information NTG0288703

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DCO16_RS10395
• Genome accession: NZ_CP028941
• Coordinates: 2016114..2017004 (+)
• Length: 296 a.a.
• NCBI ID: WP_173943571.1
• Uniprot ID: -
• Organism: Polynucleobacter antarcticus strain LimPoW16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2011114..2022004

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DCO16_RS10365 (DCO16_10340)	pth	2011275..2011871 (+)	597	WP_173943566.1	aminoacyl-tRNA hydrolase	-
DCO16_RS10370 (DCO16_10345)	-	2011890..2012156 (-)	267	WP_173943567.1	YfhL family 4Fe-4S dicluster ferredoxin	-
DCO16_RS10375 (DCO16_10350)	coaD	2012175..2012672 (-)	498	WP_173943568.1	pantetheine-phosphate adenylyltransferase	-
DCO16_RS10380 (DCO16_10355)	rsmD	2012720..2013340 (-)	621	WP_173943874.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DCO16_RS10385 (DCO16_10360)	-	2013337..2014677 (-)	1341	WP_173943569.1	pitrilysin family protein	-
DCO16_RS10390 (DCO16_10365)	-	2014677..2016050 (-)	1374	WP_173943570.1	pitrilysin family protein	-
DCO16_RS10395 (DCO16_10370)	pilA	2016114..2017004 (+)	891	WP_173943571.1	signal recognition particle-docking protein FtsY	Machinery gene
DCO16_RS10400 (DCO16_10375)	rpoH	2017147..2018040 (+)	894	WP_254598139.1	RNA polymerase sigma factor RpoH	-
DCO16_RS10405 (DCO16_10380)	-	2018042..2018632 (-)	591	WP_173943573.1	SCO family protein	-
DCO16_RS10410 (DCO16_10385)	cyoE	2018634..2019527 (-)	894	WP_173943574.1	heme o synthase	-
DCO16_RS10415 (DCO16_10390)	-	2019524..2020648 (-)	1125	WP_173943575.1	heme A synthase	-
DCO16_RS10420 (DCO16_10395)	-	2020648..2021304 (-)	657	WP_173943576.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31719.30 Da
• Isoelectric Point: 6.3004

>NTDB_id=288703 DCO16_RS10395 WP_173943571.1 2016114..2017004(+) (pilA) [Polynucleobacter antarcticus strain LimPoW16]
MFGLRKTLGSLFKTNQTDEAWFDALEESLILSDVGLPTTQQLLTTLRKAAKSEKVSSAIDLQQLLVQEVAHLLQPLESIS
NPLYVHDEKTTPEVWLIVGVNGAGKTTTIGKLCRLFQSQGKSVLLAAGDTFRAAARNQLLEWGDRNQVDVITQESGDAAA
VAHDAIHAAISRKTDILIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHQTLLVLDGNTGQNGLSQVKAFHAALGISA
LIVTKLDGTAKGGVICALAHTFQEEVRPSVLALGKGEGIDDLAPFTATQYASELFN

Nucleotide

• Length: 891 bp

>NTDB_id=288703 DCO16_RS10395 WP_173943571.1 2016114..2017004(+) (pilA) [Polynucleobacter antarcticus strain LimPoW16]
ATGTTCGGCTTACGTAAAACTCTCGGCTCCCTTTTCAAAACTAACCAGACTGATGAAGCCTGGTTTGATGCTTTAGAAGA
ATCACTCATTCTGAGTGATGTTGGCTTGCCCACTACCCAGCAACTCCTGACGACACTCCGCAAGGCAGCTAAATCTGAAA
AAGTGAGCAGTGCTATAGATCTTCAGCAGCTTTTAGTCCAAGAAGTTGCGCATCTCCTTCAGCCTTTAGAGTCGATTTCA
AACCCCCTTTATGTTCATGATGAAAAAACCACTCCGGAGGTATGGCTTATCGTCGGTGTGAATGGCGCCGGCAAGACCAC
CACCATTGGCAAACTCTGTCGCCTGTTTCAGTCTCAAGGAAAATCTGTCCTGCTGGCCGCTGGTGATACTTTTCGTGCCG
CAGCTCGTAACCAGCTCTTGGAGTGGGGTGATCGCAATCAGGTTGATGTCATCACCCAAGAGAGTGGCGATGCTGCAGCA
GTAGCCCATGATGCGATTCATGCGGCCATCTCCAGAAAGACCGATATTCTCATCATTGATACGGCTGGACGGCTTGCTAC
TCAAGACCATCTCATGGAAGAGTTGAAAAAGGTTAAGCGCGTGATTGGCAAAGCCCTTCCTGGGGCGCCACACCAGACTT
TGCTCGTACTCGATGGCAACACAGGTCAAAATGGTTTAAGCCAAGTCAAAGCCTTTCATGCAGCCCTTGGCATTTCAGCG
CTGATTGTGACGAAATTAGATGGAACCGCTAAAGGAGGGGTCATCTGTGCGCTTGCCCATACCTTTCAAGAGGAGGTCAG
GCCGTCTGTTTTGGCGCTGGGTAAAGGGGAAGGGATTGATGATCTTGCGCCCTTCACAGCCACCCAGTATGCCTCTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (92-295)

• SRP54-type protein, helical bundle domain (SRP54_N) (4-68)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.361	99.324	0.51