Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DCO16_RS07625 Genome accession   NZ_CP028941
Coordinates   1463510..1464874 (-) Length   454 a.a.
NCBI ID   WP_173943093.1    Uniprot ID   A0A6M9PL46
Organism   Polynucleobacter antarcticus strain LimPoW16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1458510..1469874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO16_RS07605 (DCO16_07590) dapD 1459812..1460639 (+) 828 WP_173943089.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  DCO16_RS07610 (DCO16_07595) dapE 1460656..1461807 (+) 1152 WP_173943090.1 succinyl-diaminopimelate desuccinylase -
  DCO16_RS07615 (DCO16_07600) prmB 1461827..1462723 (+) 897 WP_173943091.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  DCO16_RS07620 (DCO16_07605) - 1462760..1463458 (+) 699 WP_173943092.1 hypothetical protein -
  DCO16_RS07625 (DCO16_07610) radA 1463510..1464874 (-) 1365 WP_173943093.1 DNA repair protein RadA Machinery gene
  DCO16_RS07630 (DCO16_07615) - 1464879..1465388 (-) 510 WP_173943094.1 hypothetical protein -
  DCO16_RS07635 (DCO16_07620) - 1465385..1467229 (-) 1845 WP_254598126.1 potassium transporter Kup -
  DCO16_RS07645 (DCO16_07630) - 1467704..1468480 (-) 777 WP_173943096.1 hypothetical protein -
  DCO16_RS07650 (DCO16_07635) - 1468594..1469538 (+) 945 WP_173943097.1 DUF4268 domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48058.91 Da        Isoelectric Point: 7.6029

>NTDB_id=288698 DCO16_RS07625 WP_173943093.1 1463510..1464874(-) (radA) [Polynucleobacter antarcticus strain LimPoW16]
MAKIKSIYICQSCGANSAKWQGQCPSCQAWNTLEEGLPEVSSNTRFQGLAPSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSSAGMNVLYSSGEESAAQIALRAKRIALVAPQLEVLAEIQLEKLLSIMD
TVKPQVLVVDSIQTLYSDALSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVANPSAIFLSQHAEMVPGACVLVTQEGSRPLLVEIQALVDTAHIPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNKALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIAGLRVIPVERIDQAIAAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=288698 DCO16_RS07625 WP_173943093.1 1463510..1464874(-) (radA) [Polynucleobacter antarcticus strain LimPoW16]
GTGGCCAAAATTAAATCTATCTACATCTGCCAGTCCTGTGGCGCAAACTCTGCAAAATGGCAAGGGCAGTGCCCTTCATG
CCAAGCTTGGAATACCCTTGAGGAAGGCTTGCCTGAAGTAAGCTCAAATACCCGTTTTCAAGGTTTAGCACCATCACTCC
CGCGGCAAAAGCTATCCGCTATTAGTGCAGAAGATCTTCCCCGTTTTAGTACTGGCGTAGAGGAGTTTGATCGCGTTCTG
GGTGGGGGTTTAGTTCCCGGTGGCGTAGTCCTATTAGGCGGTGATCCTGGTATTGGGAAGTCCACCTTGCTATTGCAAGC
ATTAGCTGAAATGAGTTCAGCGGGTATGAATGTGCTCTATAGCAGTGGTGAAGAATCTGCTGCACAAATTGCCCTGCGTG
CAAAACGGATTGCACTGGTTGCGCCTCAATTAGAAGTGCTTGCAGAAATTCAATTAGAAAAGCTGTTATCGATTATGGAT
ACGGTCAAGCCACAAGTGTTGGTGGTGGATTCTATTCAGACGCTATATTCAGATGCATTAAGTTCAGCCCCTGGTTCGGT
AGCTCAAGTGCGCGAGTGCGCTGCGCAATTAACGAGAGCAGCTAAATCAAGTGGTATCTGTGTGTTGATGGTAGGCCATG
TCACTAAAGATGGCCATTTAGCCGGTCCCCGAGTGCTTGAGCATATTGTCGATACCGTTTTGTATTTTGAGGGCGATACG
CATTCATCATTTAGATTGGTGCGCTCCATTAAAAACCGCTTTGGCGCTGTCAATGAGTTGGGCGTTTTTGCTATGACTGA
AAAAGGTCTACGTGGGGTTGCTAACCCTTCAGCTATTTTCTTGTCACAACATGCAGAGATGGTGCCGGGTGCCTGTGTAT
TAGTGACCCAAGAGGGTAGTCGTCCGCTCTTAGTTGAAATTCAGGCACTGGTAGATACCGCGCATATTCCCAATCCTCGA
CGATTGGCCGTGGGATTAGAGCAAGCCCGTTTAGCGATGCTCTTGGCAGTACTCCATCGACATGCGGGTGTAGCCTGTTT
TGATCAAGATGTTTTCTTAAATGCGGTAGGTGGCGTGAAGATTTCAGAGCCAGCAGCTGACTTGGCAGTCTTGTTAGCGA
TTCAATCATCGATTCGCAATAAAGCATTACCGAAAGAACTGATTGTTTTTGGTGAGGTTGGGTTAGCGGGAGAGATTCGT
CCTTGCCCAAGAGGTCAAGAGCGTTTGAAGGAAGCAGCTAAGCTAGGATTTACCGTAGCAATCATTCCTAAAGCCAATAT
GCCCAAGACCAAGATCGCTGGATTGCGCGTGATTCCGGTTGAGCGAATTGATCAGGCCATAGCAGCAGCTGCAGAGTTGA
GTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)

AAA domain (AAA_25)

(78-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9PL46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

99.559

0.491
  radA Streptococcus mitis NCTC 12261

47.086

94.493

0.445
  radA Streptococcus pneumoniae Rx1

47.086

94.493

0.445
  radA Streptococcus pneumoniae D39

47.086

94.493

0.445
  radA Streptococcus pneumoniae R6

47.086

94.493

0.445
  radA Streptococcus pneumoniae TIGR4

47.086

94.493

0.445
  radA Streptococcus mitis SK321

47.086

94.493

0.445

Multiple sequence alignment