Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   FORC83_RS07140 Genome accession   NZ_CP028933
Coordinates   1393753..1394934 (-) Length   393 a.a.
NCBI ID   WP_002867247.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FORC_083     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388753..1399934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC83_RS07110 (FORC83_1439) - 1389297..1389638 (+) 342 WP_002867250.1 hypothetical protein -
  FORC83_RS07115 (FORC83_1440) flgM 1389701..1389898 (+) 198 WP_002867249.1 flagellar biosynthesis anti-sigma factor FlgM -
  FORC83_RS07120 (FORC83_1441) - 1389941..1390375 (+) 435 WP_002779263.1 flagellar protein FlgN -
  FORC83_RS07125 (FORC83_1442) flgK 1390385..1392211 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  FORC83_RS07130 (FORC83_1443) - 1392228..1392992 (+) 765 WP_002851318.1 TIGR02757 family protein -
  FORC83_RS07135 (FORC83_1444) - 1392996..1393760 (+) 765 WP_002855821.1 TSUP family transporter -
  FORC83_RS07140 (FORC83_1445) ctsF 1393753..1394934 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  FORC83_RS07145 (FORC83_1446) ctsE 1394931..1396490 (-) 1560 WP_131234783.1 GspE/PulE family protein Machinery gene
  FORC83_RS07150 (FORC83_1447) ctsX 1396480..1397067 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  FORC83_RS07155 (FORC83_1448) ctsP 1397071..1397679 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FORC83_RS07160 (FORC83_1449) ctsD 1397672..1399084 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FORC83_RS07165 (FORC83_1450) ctsR 1399062..1399373 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45750.33 Da        Isoelectric Point: 9.0938

>NTDB_id=288688 FORC83_RS07140 WP_002867247.1 1393753..1394934(-) (ctsF) [Campylobacter jejuni strain FORC_083]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=288688 FORC83_RS07140 WP_002867247.1 1393753..1394934(-) (ctsF) [Campylobacter jejuni strain FORC_083]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment