Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   FORC83_RS05590 Genome accession   NZ_CP028933
Coordinates   1075171..1076121 (+) Length   316 a.a.
NCBI ID   WP_002899461.1    Uniprot ID   A0A5Z1S6J2
Organism   Campylobacter jejuni strain FORC_083     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1059641..1079759 1075171..1076121 within 0


Gene organization within MGE regions


Location: 1059641..1079759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC83_RS05520 (FORC83_1110) pglI 1059641..1060570 (-) 930 WP_002867212.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  FORC83_RS05525 (FORC83_1111) pglH 1060563..1061642 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  FORC83_RS05530 (FORC83_1112) pglK 1061639..1063333 (-) 1695 WP_002867213.1 ABC-type lipopolysaccharide transporter PglK -
  FORC83_RS05535 (FORC83_1113) galE 1063327..1064313 (-) 987 WP_060810102.1 UDP-glucose 4-epimerase GalE -
  FORC83_RS05540 (FORC83_1114) - 1064372..1065166 (-) 795 WP_002860221.1 3'-5' exonuclease -
  FORC83_RS05545 (FORC83_1115) waaC 1065233..1066261 (+) 1029 WP_057042396.1 lipopolysaccharide heptosyltransferase I -
  FORC83_RS05550 (FORC83_1116) htrB 1066251..1067138 (+) 888 WP_131234745.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  FORC83_RS05555 (FORC83_1117) - 1067135..1067902 (+) 768 Protein_1091 glycosyltransferase family 2 protein -
  FORC83_RS05560 (FORC83_1118) - 1067895..1068962 (+) 1068 WP_131234747.1 glycosyltransferase family 4 protein -
  FORC83_RS05565 (FORC83_1119) - 1068954..1069646 (-) 693 WP_306461491.1 glycosyltransferase -
  FORC83_RS08995 (FORC83_1120) - 1069643..1069819 (-) 177 WP_251824258.1 glycosyltransferase family 2 protein -
  FORC83_RS09105 (FORC83_1121) - 1069812..1071026 (-) 1215 WP_041160148.1 glycosyltransferase family 2 protein -
  FORC83_RS05575 (FORC83_1122) - 1071019..1072950 (-) 1932 WP_053875604.1 hypothetical protein -
  FORC83_RS05580 (FORC83_1123) - 1073026..1074300 (+) 1275 WP_052785345.1 DUF2972 domain-containing protein -
  FORC83_RS05585 (FORC83_1124) - 1074264..1075112 (-) 849 WP_074486956.1 glycosyltransferase family 2 protein -
  FORC83_RS05590 (FORC83_1125) waaF 1075171..1076121 (+) 951 WP_002899461.1 lipopolysaccharide heptosyltransferase II Regulator
  FORC83_RS05595 (FORC83_1126) - 1076107..1076871 (-) 765 WP_053875603.1 glycosyltransferase family 25 protein -
  FORC83_RS05600 (FORC83_1127) gmhA 1076871..1077431 (-) 561 WP_002869619.1 D-sedoheptulose 7-phosphate isomerase -
  FORC83_RS05605 (FORC83_1128) rfaE1 1077428..1078813 (-) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  FORC83_RS05610 (FORC83_1129) rfaD 1078806..1079759 (-) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36265.84 Da        Isoelectric Point: 10.2322

>NTDB_id=288680 FORC83_RS05590 WP_002899461.1 1075171..1076121(+) (waaF) [Campylobacter jejuni strain FORC_083]
MKIFIHLPTWLGDAVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=288680 FORC83_RS05590 WP_002899461.1 1075171..1076121(+) (waaF) [Campylobacter jejuni strain FORC_083]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCACGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGTTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGATAGT
GGCCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAAAATTAGTACATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z1S6J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.541

99.367

0.949

Multiple sequence alignment