Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EHC68_RS05315 Genome accession   NZ_CP034305
Coordinates   1063548..1065578 (+) Length   676 a.a.
NCBI ID   WP_085627127.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20151116002-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1058548..1070578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC68_RS05290 (EHC68_05360) rsxC 1058760..1061369 (-) 2610 WP_108744523.1 electron transport complex subunit RsxC -
  EHC68_RS05295 (EHC68_05365) rsxB 1061378..1061974 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  EHC68_RS05300 (EHC68_05370) rsxA 1061978..1062556 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  EHC68_RS05315 (EHC68_05385) uvrB 1063548..1065578 (+) 2031 WP_085627127.1 excinuclease ABC subunit UvrB Machinery gene
  EHC68_RS05320 (EHC68_05390) luxO 1065868..1067271 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EHC68_RS05325 (EHC68_05395) luxU 1067274..1067612 (+) 339 WP_025553179.1 quorum-sensing phosphorelay protein LuxU -
  EHC68_RS05330 (EHC68_05400) yvcK 1067691..1068584 (-) 894 WP_031855748.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  EHC68_RS05335 (EHC68_05405) moaA 1068880..1069869 (+) 990 WP_025554146.1 GTP 3',8-cyclase MoaA -
  EHC68_RS05340 (EHC68_05410) moaB 1069971..1070483 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77098.83 Da        Isoelectric Point: 4.8615

>NTDB_id=288680 EHC68_RS05315 WP_085627127.1 1063548..1065578(+) (uvrB) [Vibrio parahaemolyticus strain 20151116002-3]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDELDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKIELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQVYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=288680 EHC68_RS05315 WP_085627127.1 1063548..1065578(+) (uvrB) [Vibrio parahaemolyticus strain 20151116002-3]
ATGAGTAAAGTTTATGAACTGGTCTCTGAGTATCAACCGTCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAAGG
CTTAGATGCGGGGTTGGCGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGCCCTGCAATTTTACTGGCGCCAAATAAAACCCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCTTACTACGACTACTACCAACCAGAAGCGTACGTGCCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGTTTGTCTGCCACCAAAGCTTTACTCGAACGAA
AAGACGCCATCATCGTCGCTTCTGTCTCGGCCATTTATGGTTTGGGTGATCCGGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGACATGCTTCGTCGCCTAGCGGAACTCCAATACTCGCGTAATGATGTCGC
TTTTGAACGCGGTCAGTTCCGTGTTCGCGGCGAAGTGATTGACATATTCCCAGCCGAGTCTGACCAAGATGCTGTCCGTG
TTGAAATGTTTGATGATGAATTGGATTGTATCAGTGTATTTGACCCATTGACGGGTGTCGTGAAACAAAGAGATTTGCCG
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGTATTCTCGAAGCGATAGAAAGCATCAAAATTGA
GCTCGAAGTACGCAAGAAACAATTACTAGAGAACAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTTGGTTTCTGTTCTGGTATCGAAAACTACTCACGTTATCTCAGTGGTCGTTCTGAGGGC
GAGCCGCCTCCAACCTTGTTCGATTACTTGCCTCATGATGGTTTGCTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGTCCTCTAAAATTTGAAGAATTTGAGTCTCTTGCTCCGCAAACTATTTTCGTCTCGGCAACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGGTGAAATTGCGGATCAAGTCGTGCGTCCTACCGGCTTGCTGGATCCAATACTCGAAGTTCG
ACCAGTCGCGACTCAGGTCGATGATCTGTTGTCTGAAATTCGTATTCGTGCCGCCAAAGAGGAACGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAGCATGATGTTCGTGTTCGTTATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTGCGCTTAGGTGAGTTCGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGCTGGTGGCAATTTTGGATGCCGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCACGAAACATTGAGGGTAAAGCGATTCTCTATGCGGATAGCATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACCAATCGTCGTCGTGAGAAGCAGCAAGTGTACAACGAGAAAATGGGCATTACGCC
GCAAGCGTTAAAACGTAATATCAAGGATATTATGGAATTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTGCCACTGTCTAAAGTGGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCGGCGATGTACCAACATGCTCAGGATCTGGAATTTGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(13-129)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

UvrB interaction domain (UvrB_inter)

(159-250)

UvrB/uvrC motif (UVR)

(636-671)

Ultra-violet resistance protein B (UvrB)

(553-594)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.706

98.521

0.549
  uvrB Streptococcus pneumoniae R6

55.706

98.521

0.549
  uvrB Streptococcus pneumoniae D39

55.706

98.521

0.549

Multiple sequence alignment