Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E2348C_RS02135 Genome accession   NC_011601
Coordinates   454882..455487 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O127:H6 str. E2348/69     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 449882..460487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2348C_RS29385 - 450436..450534 (+) 99 Protein_407 hypothetical protein -
  E2348C_RS02105 (E2348_C_0401) rsmS 450587..450748 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  E2348C_RS02110 (E2348_C_0402) priC 450762..451289 (-) 528 WP_000858961.1 primosomal replication protein N'' -
  E2348C_RS02115 (E2348_C_0403) ybaN 451359..451736 (+) 378 WP_001188900.1 DUF454 family protein -
  E2348C_RS02120 (E2348_C_0404) apt 451889..452440 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  E2348C_RS02125 (E2348_C_0405) dnaX 452569..454500 (+) 1932 WP_000121999.1 DNA polymerase III subunit gamma/tau -
  E2348C_RS02130 (E2348_C_0406) ybaB 454553..454882 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E2348C_RS02135 (E2348_C_0407) recR 454882..455487 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E2348C_RS02140 (E2348_C_0408) htpG 455597..457471 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  E2348C_RS02145 (E2348_C_0409) adk 457652..458296 (+) 645 WP_001313630.1 adenylate kinase -
  E2348C_RS02150 (E2348_C_0410) hemH 458428..459390 (+) 963 WP_001250115.1 ferrochelatase -
  E2348C_RS02155 (E2348_C_0411) aes 459387..460346 (-) 960 WP_000801821.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=28867 E2348C_RS02135 WP_001195025.1 454882..455487(+) (recR) [Escherichia coli O127:H6 str. E2348/69]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=28867 E2348C_RS02135 WP_001195025.1 454882..455487(+) (recR) [Escherichia coli O127:H6 str. E2348/69]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment