Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC68_RS00715 Genome accession   NZ_CP034305
Coordinates   133614..134087 (-) Length   157 a.a.
NCBI ID   WP_149150274.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20151116002-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 128614..139087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC68_RS00680 (EHC68_00695) - 130159..130560 (+) 402 WP_042764226.1 hypothetical protein -
  EHC68_RS26860 (EHC68_00700) - 130664..130892 (-) 229 Protein_113 hypothetical protein -
  EHC68_RS00685 (EHC68_00705) - 130889..131164 (-) 276 WP_042764225.1 hypothetical protein -
  EHC68_RS00690 (EHC68_00710) - 131221..131553 (-) 333 WP_079380307.1 hypothetical protein -
  EHC68_RS00695 (EHC68_00715) - 131632..132366 (-) 735 WP_149150272.1 transcriptional regulator -
  EHC68_RS00700 (EHC68_00720) - 132506..132682 (-) 177 WP_140111799.1 hypothetical protein -
  EHC68_RS00705 (EHC68_00725) - 132686..133129 (-) 444 WP_140111797.1 DUF2787 domain-containing protein -
  EHC68_RS00710 (EHC68_00730) - 133180..133617 (-) 438 WP_187644760.1 DUF2787 domain-containing protein -
  EHC68_RS00715 (EHC68_00735) radC 133614..134087 (-) 474 WP_149150274.1 RadC family protein Machinery gene
  EHC68_RS00720 (EHC68_00740) - 134236..134421 (+) 186 WP_149150275.1 AlpA family transcriptional regulator -
  EHC68_RS00725 (EHC68_00745) - 134433..134750 (+) 318 Protein_122 RNase H family protein -
  EHC68_RS00730 (EHC68_00750) - 134925..136037 (+) 1113 WP_149150277.1 AAA family ATPase -
  EHC68_RS00735 (EHC68_00755) - 136052..138262 (+) 2211 WP_236576013.1 S8 family peptidase -
  EHC68_RS00740 (EHC68_00760) - 138378..138845 (+) 468 WP_149150278.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17823.05 Da        Isoelectric Point: 5.0566

>NTDB_id=288649 EHC68_RS00715 WP_149150274.1 133614..134087(-) (radC) [Vibrio parahaemolyticus strain 20151116002-3]
MNPKTDEYQKQQRYQENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSYEREVFALLLLDNQNRLIEFKELFQGT
VDAASVYPREVVKAVLEVNAAAVIFTHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=288649 EHC68_RS00715 WP_149150274.1 133614..134087(-) (radC) [Vibrio parahaemolyticus strain 20151116002-3]
ATGAATCCGAAAACCGATGAATACCAAAAACAGCAGCGCTATCAGGAGAACGAGATCCTAGAGCATGCGGCTGAGATACT
GGCGACACGCTACGTACGTGGTGATGCGCTAACCAATCCTGATGCCACCAAAGAGTATGTGCGCTGTAAGCTAGGCAGCT
ATGAACGTGAGGTGTTTGCCTTATTGCTTCTGGATAACCAAAACCGACTGATTGAGTTTAAAGAGCTGTTTCAAGGAACG
GTGGACGCGGCCAGCGTCTACCCACGTGAAGTGGTGAAAGCGGTATTAGAAGTGAATGCCGCAGCGGTGATATTTACGCA
TAACCATCCATCCGGTGACTCAACACCTTCCCAAGCTGACAGACGCATAACCGAAAGACTCAAAGATGCTTTAGCGCTGG
TGGATGTGAGAGTTCTCGACCATATCGTGACAGGCGATACCTGCACCTCATTTGCTGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.255

87.261

0.395