Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RBAM_RS08040 Genome accession   NC_009725
Coordinates   1597869..1598768 (+) Length   299 a.a.
NCBI ID   WP_012117549.1    Uniprot ID   -
Organism   Bacillus velezensis FZB42     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1592869..1603768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAM_RS08020 (RBAM_015900) - 1593560..1595263 (+) 1704 WP_012117548.1 hypothetical protein -
  RBAM_RS08025 (RBAM_015910) - 1595260..1595541 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  RBAM_RS08030 (RBAM_015920) sucC 1595716..1596873 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  RBAM_RS08035 (RBAM_015930) sucD 1596902..1597804 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  RBAM_RS08040 (RBAM_015940) dprA 1597869..1598768 (+) 900 WP_012117549.1 DNA-processing protein DprA Machinery gene
  RBAM_RS08045 (RBAM_015950) topA 1598950..1601025 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  RBAM_RS08050 (RBAM_015960) trmFO 1601090..1602397 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RBAM_RS08055 (RBAM_015970) xerC 1602467..1603384 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32834.02 Da        Isoelectric Point: 7.7903

>NTDB_id=28862 RBAM_RS08040 WP_012117549.1 1597869..1598768(+) (dprA) [Bacillus velezensis FZB42]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPHPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSCYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=28862 RBAM_RS08040 WP_012117549.1 1597869..1598768(+) (dprA) [Bacillus velezensis FZB42]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGCATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCTGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCCTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment