Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EHC69_RS12320 Genome accession   NZ_CP034298
Coordinates   2465585..2466184 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain 20160303005-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2460585..2471184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC69_RS12295 (EHC69_12425) - 2460691..2461350 (-) 660 WP_005397228.1 transcriptional regulator -
  EHC69_RS12300 (EHC69_12430) - 2461379..2462656 (-) 1278 WP_029798799.1 serine dehydratase subunit alpha family protein -
  EHC69_RS12305 (EHC69_12435) - 2462672..2463052 (-) 381 WP_005479566.1 RidA family protein -
  EHC69_RS12310 (EHC69_12440) - 2463370..2464629 (+) 1260 WP_005494432.1 amino acid permease -
  EHC69_RS12315 (EHC69_12445) aqpZ 2464836..2465534 (+) 699 WP_005460095.1 aquaporin Z -
  EHC69_RS12320 (EHC69_12450) recR 2465585..2466184 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  EHC69_RS12325 (EHC69_12455) - 2466214..2466543 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  EHC69_RS12330 (EHC69_12460) dnaX 2466626..2468761 (-) 2136 WP_114867740.1 DNA polymerase III subunit gamma/tau -
  EHC69_RS12335 (EHC69_12465) apt 2468770..2469315 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  EHC69_RS12340 (EHC69_12470) - 2469481..2469828 (-) 348 WP_023585236.1 YbaN family protein -
  EHC69_RS29850 (EHC69_12475) - 2469901..2470032 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=288608 EHC69_RS12320 WP_005460088.1 2465585..2466184(-) (recR) [Vibrio parahaemolyticus strain 20160303005-1]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=288608 EHC69_RS12320 WP_005460088.1 2465585..2466184(-) (recR) [Vibrio parahaemolyticus strain 20160303005-1]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCGGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATATTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432