Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DCC85_RS19680 Genome accession   NZ_CP028922
Coordinates   4170832..4172199 (-) Length   455 a.a.
NCBI ID   WP_108467081.1    Uniprot ID   A0A2S0UED5
Organism   Paenibacillus sp. CAA11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4165832..4177199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCC85_RS19650 (DCC85_19650) ispF 4165855..4166337 (-) 483 WP_108467075.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  DCC85_RS19655 (DCC85_19655) ispD 4166339..4167049 (-) 711 WP_108467076.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DCC85_RS19660 (DCC85_19660) - 4167144..4168229 (-) 1086 WP_108467077.1 PIN/TRAM domain-containing protein -
  DCC85_RS19665 (DCC85_19665) - 4168424..4168819 (+) 396 WP_108467078.1 DUF1573 domain-containing protein -
  DCC85_RS19670 (DCC85_19670) pssA 4168871..4169599 (-) 729 WP_108467079.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  DCC85_RS19675 (DCC85_19675) disA 4169742..4170818 (-) 1077 WP_108467080.1 DNA integrity scanning diadenylate cyclase DisA -
  DCC85_RS19680 (DCC85_19680) radA 4170832..4172199 (-) 1368 WP_108467081.1 DNA repair protein RadA Machinery gene
  DCC85_RS19685 (DCC85_19685) clpC 4172481..4174925 (-) 2445 WP_108467082.1 ATP-dependent protease ATP-binding subunit ClpC -
  DCC85_RS19690 (DCC85_19690) - 4174989..4176047 (-) 1059 WP_108467083.1 protein arginine kinase -
  DCC85_RS19695 (DCC85_19695) - 4176060..4176584 (-) 525 WP_108467084.1 UvrB/UvrC motif-containing protein -
  DCC85_RS19700 (DCC85_19700) - 4176625..4177086 (-) 462 WP_108467085.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49416.07 Da        Isoelectric Point: 7.1211

>NTDB_id=288565 DCC85_RS19680 WP_108467081.1 4170832..4172199(-) (radA) [Paenibacillus sp. CAA11]
MAKTKTKFYCTECGYESPKWYGKCPGCGTWNSMLEETESVVKTQGMTSGIFQSKEKPLPIIDIESGKEPRVQTGIGELNR
VLGGGVVPGSLVLVGGDPGIGKSTLLLQTSHELAKSGLKVLYISGEESVKQTKLRAERLGALSPQLYVLCESSMERIEEA
IESVSPDFLVIDSIQTVYLPEITSAPGSVSQVRECTGRFMRIAKGQGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMNESGLREVANPSELFLSERPLGVAGSTVVASMEGTRPMLVELQALIASTHFPS
PRRMGTGVDHHRMNLIIAVLEKRMGMFLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDMPTKPDDVIFGEVGLTGE
VRAVSRAEQRVREAAKLGFKRVILPEKSLKGWKSPKEIQVIGVNTVADALAVALN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=288565 DCC85_RS19680 WP_108467081.1 4170832..4172199(-) (radA) [Paenibacillus sp. CAA11]
ATGGCGAAAACAAAAACGAAGTTTTACTGCACAGAATGCGGGTATGAATCCCCCAAGTGGTACGGCAAATGTCCGGGATG
CGGAACATGGAATTCCATGTTGGAGGAGACGGAGTCAGTTGTTAAGACTCAGGGGATGACCTCAGGGATATTCCAAAGTA
AAGAAAAACCGCTTCCCATCATAGATATAGAAAGTGGCAAGGAGCCGAGAGTGCAGACTGGAATCGGAGAGCTTAACCGC
GTTCTAGGCGGTGGAGTCGTACCGGGCTCCCTCGTGCTCGTCGGCGGAGATCCGGGCATCGGTAAATCCACCCTGCTGCT
CCAGACTTCCCATGAGCTGGCTAAGTCCGGCCTCAAGGTCCTTTATATTTCAGGAGAGGAATCTGTGAAGCAGACGAAGC
TTCGTGCAGAGCGGCTCGGCGCCTTATCCCCGCAATTGTATGTACTGTGTGAGAGCAGTATGGAGCGGATCGAGGAGGCT
ATCGAAAGTGTGTCCCCGGACTTTTTGGTCATCGATTCGATTCAGACGGTGTACTTACCGGAAATCACAAGCGCGCCAGG
CAGCGTTTCTCAGGTTAGGGAATGCACGGGGCGCTTTATGCGCATTGCGAAAGGCCAGGGAATCGCTACAGTGCTGGTCG
GCCATGTGACAAAGGAAGGCGCCATTGCGGGCCCGCGGATGCTGGAGCATATGGTAGATTGTGTCCTTTATTTCGAAGGG
GAACGGCATCATACGTATCGGCTGCTTAGAGCGGTTAAGAACCGGTTTGGCTCTACGAACGAGATCGGGATCTTTGAGAT
GAACGAGTCCGGACTTCGGGAAGTAGCCAACCCATCAGAGCTTTTTCTGTCGGAGAGACCGCTCGGCGTAGCGGGGTCCA
CTGTTGTTGCAAGTATGGAAGGAACACGGCCTATGCTTGTTGAGCTTCAGGCTTTGATTGCATCAACTCATTTTCCTTCG
CCTAGACGAATGGGAACGGGTGTGGATCATCATCGCATGAATCTGATTATTGCTGTTCTTGAGAAGCGGATGGGCATGTT
TTTACAGAATCAGGACGCTTATGTAAACGTTGCAGGCGGTGTCCGTCTAGATGAGCCTGCGGTGGATCTGGCGATTGCGG
TTAGCATTGCCTCCAGCTTTCGGGATATGCCGACAAAGCCGGATGATGTTATTTTTGGAGAAGTTGGGCTTACTGGTGAA
GTGCGCGCGGTATCCAGGGCCGAACAGCGGGTGAGGGAAGCTGCAAAGCTCGGGTTCAAACGGGTTATTTTACCGGAGAA
GAGCCTCAAGGGGTGGAAGAGCCCAAAAGAAATTCAAGTAATCGGTGTAAACACTGTTGCAGATGCGCTAGCGGTTGCGT
TAAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(78-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0UED5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.982

100

0.681
  radA Streptococcus mitis NCTC 12261

59.111

98.901

0.585
  radA Streptococcus pneumoniae Rx1

59.111

98.901

0.585
  radA Streptococcus pneumoniae D39

59.111

98.901

0.585
  radA Streptococcus pneumoniae R6

59.111

98.901

0.585
  radA Streptococcus pneumoniae TIGR4

59.111

98.901

0.585
  radA Streptococcus mitis SK321

58.889

98.901

0.582

Multiple sequence alignment