Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   C5B40_RS08010 Genome accession   NZ_CP028917
Coordinates   1687590..1688147 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1682590..1693147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS07995 pilY1 1682682..1686173 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  C5B40_RS08000 pilX 1686185..1686772 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  C5B40_RS08005 pilW 1686769..1687593 (-) 825 WP_031759378.1 type 4a pilus minor pilin PilW -
  C5B40_RS08010 pilV 1687590..1688147 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  C5B40_RS08015 - 1688138..1688644 (-) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  C5B40_RS08020 - 1688750..1689259 (-) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  C5B40_RS08025 thiO 1689394..1690488 (+) 1095 WP_003134931.1 glycine oxidase ThiO -
  C5B40_RS08030 pilR 1690534..1691871 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=288513 C5B40_RS08010 WP_003119423.1 1687590..1688147(-) (pilV) [Pseudomonas aeruginosa strain JB2]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=288513 C5B40_RS08010 WP_003119423.1 1687590..1688147(-) (pilV) [Pseudomonas aeruginosa strain JB2]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995

Multiple sequence alignment