Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC66_RS03030 Genome accession   NZ_CP034294
Coordinates   585291..585764 (-) Length   157 a.a.
NCBI ID   WP_122020035.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140829008-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580291..590764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC66_RS03005 (EHC66_03070) - 580320..581480 (-) 1161 WP_122020038.1 IS30 family transposase -
  EHC66_RS03010 (EHC66_03075) - 581541..582734 (+) 1194 Protein_487 IS4 family transposase -
  EHC66_RS03015 (EHC66_03080) - 582771..583928 (-) 1158 WP_122020037.1 hypothetical protein -
  EHC66_RS03020 (EHC66_03085) - 583925..584749 (-) 825 WP_122020036.1 YafY family protein -
  EHC66_RS03025 (EHC66_03090) - 584863..585294 (-) 432 WP_039548379.1 DUF2787 domain-containing protein -
  EHC66_RS03030 (EHC66_03095) radC 585291..585764 (-) 474 WP_122020035.1 RadC family protein Machinery gene
  EHC66_RS03035 (EHC66_03100) - 585910..586086 (+) 177 WP_025542599.1 AlpA family transcriptional regulator -
  EHC66_RS03040 (EHC66_03105) - 586251..586475 (+) 225 WP_039540862.1 hypothetical protein -
  EHC66_RS03045 (EHC66_03110) - 586487..586969 (+) 483 WP_122020034.1 DUF2787 domain-containing protein -
  EHC66_RS03050 (EHC66_03115) - 587049..587951 (+) 903 WP_236578134.1 LPD25 domain-containing protein -
  EHC66_RS03055 (EHC66_03120) - 588126..588710 (+) 585 WP_122020033.1 DUF2913 family protein -
  EHC66_RS03060 (EHC66_03125) - 588720..589058 (+) 339 WP_114867850.1 hypothetical protein -
  EHC66_RS03065 (EHC66_03130) - 589269..589640 (+) 372 WP_236578135.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17579.94 Da        Isoelectric Point: 6.3795

>NTDB_id=288494 EHC66_RS03030 WP_122020035.1 585291..585764(-) (radC) [Vibrio parahaemolyticus strain 20140829008-1]
MSTDNLHYQKQQKYQENEILEHAAEILANRYVRGDALCNPDATKEYVRFKLASAEHEVFALLLLDSQHRVIEFKPLFKGT
IDSASIYPREVVKTVLESNAAAVILAHNHPSGDPSPSQADKRITRKLVDTLALVDVRVLDHIVAGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=288494 EHC66_RS03030 WP_122020035.1 585291..585764(-) (radC) [Vibrio parahaemolyticus strain 20140829008-1]
ATGTCGACCGATAACCTTCACTACCAAAAACAACAGAAATACCAAGAAAATGAAATCCTAGAGCATGCCGCCGAAATCCT
AGCTAACCGCTATGTCCGCGGCGATGCCCTTTGTAATCCGGATGCAACAAAAGAGTATGTTCGATTCAAATTAGCCAGCG
CAGAACACGAAGTATTTGCGCTACTATTGCTTGATAGTCAGCACCGCGTCATTGAGTTCAAGCCGCTCTTCAAAGGAACC
ATTGACTCTGCCAGTATTTATCCACGTGAGGTTGTCAAAACCGTCTTAGAGAGCAACGCAGCCGCCGTCATTCTGGCGCA
CAACCATCCATCCGGTGACCCATCGCCATCTCAAGCAGATAAACGCATTACACGTAAGCTTGTCGATACTTTAGCGCTGG
TGGATGTCAGGGTTCTGGATCACATTGTGGCTGGAGAAAGCAGTGTCTCTTTTGCAGAGAAGGGATGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.255

87.261

0.395

Multiple sequence alignment