Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CJ12661_RS03310 Genome accession   NZ_CP028911
Coordinates   641463..641900 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain NCTC 12661     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 636463..646900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12661_RS03290 (CJ12661_0645) kdpD 636951..638882 (+) 1932 WP_002856839.1 sensor histidine kinase KdpD -
  CJ12661_RS03295 (CJ12661_0646) uvrB 638877..640850 (-) 1974 WP_044305931.1 excinuclease ABC subunit UvrB -
  CJ12661_RS03300 (CJ12661_0647) - 641004..641234 (+) 231 WP_002852327.1 hypothetical protein -
  CJ12661_RS03305 (CJ12661_0648) - 641224..641466 (+) 243 WP_002854947.1 hypothetical protein -
  CJ12661_RS03310 (CJ12661_0649) Cj0683 641463..641900 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CJ12661_RS03315 (CJ12661_0650) priA 641882..643735 (+) 1854 WP_079005308.1 primosomal protein N' -
  CJ12661_RS03320 (CJ12661_0651) cipA 643745..645139 (-) 1395 WP_108574938.1 DUF2972 domain-containing protein -
  CJ12661_RS03325 (CJ12661_0652) ispG 645285..646358 (+) 1074 WP_044305932.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=288450 CJ12661_RS03310 WP_002852324.1 641463..641900(+) (Cj0683) [Campylobacter jejuni strain NCTC 12661]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=288450 CJ12661_RS03310 WP_002852324.1 641463..641900(+) (Cj0683) [Campylobacter jejuni strain NCTC 12661]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment