Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CJ12661_RS02915 Genome accession   NZ_CP028911
Coordinates   559388..560038 (-) Length   216 a.a.
NCBI ID   WP_044305891.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12661     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 554388..565038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12661_RS02880 (CJ12661_0564) - 554766..555770 (+) 1005 WP_079005345.1 hypothetical protein -
  CJ12661_RS02885 (CJ12661_0565) tlyA 555767..556528 (+) 762 WP_044305887.1 TlyA family RNA methyltransferase -
  CJ12661_RS02890 (CJ12661_0566) ribF 556494..557348 (+) 855 WP_044305888.1 bifunctional riboflavin kinase/FAD synthetase -
  CJ12661_RS02895 (CJ12661_0567) cmoA 557335..558045 (+) 711 WP_079005305.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  CJ12661_RS02900 (CJ12661_0568) - 558035..558256 (-) 222 WP_079005306.1 EexN family lipoprotein -
  CJ12661_RS02905 (CJ12661_0569) - 558247..558687 (-) 441 WP_044305890.1 EexN family lipoprotein -
  CJ12661_RS02910 (CJ12661_0570) - 558745..559377 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  CJ12661_RS02915 (CJ12661_0571) CJE0566 559388..560038 (-) 651 WP_044305891.1 DNA/RNA non-specific endonuclease Regulator
  CJ12661_RS02920 (CJ12661_0572) nth 560035..560661 (-) 627 WP_044305892.1 endonuclease III -
  CJ12661_RS02925 (CJ12661_0573) peb4 560742..561563 (+) 822 WP_002892290.1 peptidylprolyl isomerase PEB4 -
  CJ12661_RS02930 (CJ12661_0574) fbaA 561563..562627 (+) 1065 WP_002880322.1 class II fructose-bisphosphate aldolase -
  CJ12661_RS02935 (CJ12661_0575) - 562722..564164 (+) 1443 WP_002866471.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25474.25 Da        Isoelectric Point: 9.8188

>NTDB_id=288448 CJ12661_RS02915 WP_044305891.1 559388..560038(-) (CJE0566) [Campylobacter jejuni strain NCTC 12661]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEN
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=288448 CJ12661_RS02915 WP_044305891.1 559388..560038(-) (CJE0566) [Campylobacter jejuni strain NCTC 12661]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAAAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
TAATGCTTCTTTTAGTTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAATTGCTCAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment