Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CJ12660_RS07510 Genome accession   NZ_CP028910
Coordinates   1451734..1452051 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain NCTC 12660     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446734..1457051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12660_RS07490 (CJ12660_1456) ctsE 1447603..1449162 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  CJ12660_RS07495 (CJ12660_1457) ctsX 1449152..1449739 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CJ12660_RS07500 (CJ12660_1458) ctsP 1449743..1450351 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CJ12660_RS07505 (CJ12660_1459) ctsD 1450344..1451762 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJ12660_RS07510 (CJ12660_1460) ctsR 1451734..1452051 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  CJ12660_RS07515 (CJ12660_1461) nifJ 1452075..1455635 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CJ12660_RS07520 (CJ12660_1462) - 1455728..1456369 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=288441 CJ12660_RS07510 WP_002851255.1 1451734..1452051(-) (ctsR) [Campylobacter jejuni strain NCTC 12660]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=288441 CJ12660_RS07510 WP_002851255.1 1451734..1452051(-) (ctsR) [Campylobacter jejuni strain NCTC 12660]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment