Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RBAM_RS04340 Genome accession   NC_009725
Coordinates   853925..854716 (+) Length   263 a.a.
NCBI ID   WP_012117114.1    Uniprot ID   -
Organism   Bacillus velezensis FZB42     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 848925..859716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAM_RS04315 (RBAM_008540) - 850918..851802 (+) 885 WP_012117112.1 PhzF family phenazine biosynthesis isomerase -
  RBAM_RS04320 (RBAM_008550) - 851879..852463 (+) 585 WP_007408549.1 nitroreductase family protein -
  RBAM_RS04325 (RBAM_008560) - 852504..852695 (-) 192 WP_003155508.1 YfhD family protein -
  RBAM_RS04330 (RBAM_008570) - 852766..852876 (-) 111 WP_003155504.1 YfhE family protein -
  RBAM_RS04335 (RBAM_008580) - 852934..853833 (-) 900 WP_012117113.1 TIGR01777 family oxidoreductase -
  RBAM_RS04340 (RBAM_008590) recX 853925..854716 (+) 792 WP_012117114.1 recombination regulator RecX Regulator
  RBAM_RS04345 (RBAM_008600) - 854723..855037 (+) 315 WP_007408553.1 YfhH family protein -
  RBAM_RS04350 (RBAM_008610) - 855181..856374 (+) 1194 WP_123912797.1 MFS transporter -
  RBAM_RS04355 (RBAM_008620) - 856414..856803 (-) 390 WP_012117116.1 DUF2606 family protein -
  RBAM_RS04360 (RBAM_008630) - 856766..857677 (-) 912 WP_012117117.1 trypsin-like serine peptidase -
  RBAM_RS04365 (RBAM_008640) - 857824..857976 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  RBAM_RS04370 (RBAM_008650) - 858100..858369 (+) 270 WP_012117118.1 YfhJ family protein -
  RBAM_RS04375 (RBAM_008660) - 858502..859029 (+) 528 WP_012117119.1 SH3 domain-containing protein -
  RBAM_RS04380 (RBAM_008670) - 859115..859450 (+) 336 WP_012117120.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31004.21 Da        Isoelectric Point: 6.0921

>NTDB_id=28843 RBAM_RS04340 WP_012117114.1 853925..854716(+) (recX) [Bacillus velezensis FZB42]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=28843 RBAM_RS04340 WP_012117114.1 853925..854716(+) (recX) [Bacillus velezensis FZB42]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGACGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment