Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EHC64_RS05130 Genome accession   NZ_CP034289
Coordinates   1031034..1031633 (+) Length   199 a.a.
NCBI ID   WP_025553812.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140722001-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1026034..1036633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC64_RS27800 (EHC64_05215) - 1027186..1027317 (+) 132 WP_005380608.1 hypothetical protein -
  EHC64_RS05110 (EHC64_05220) - 1027333..1027737 (+) 405 WP_005494429.1 YbaN family protein -
  EHC64_RS05115 (EHC64_05225) apt 1027903..1028448 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  EHC64_RS05120 (EHC64_05230) dnaX 1028457..1030592 (+) 2136 WP_140103473.1 DNA polymerase III subunit gamma/tau -
  EHC64_RS05125 (EHC64_05235) - 1030675..1031004 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  EHC64_RS05130 (EHC64_05240) recR 1031034..1031633 (+) 600 WP_025553812.1 recombination mediator RecR Machinery gene
  EHC64_RS05135 (EHC64_05245) aqpZ 1031684..1032382 (-) 699 WP_005460095.1 aquaporin Z -
  EHC64_RS05140 (EHC64_05250) - 1032589..1033848 (-) 1260 WP_005494432.1 amino acid permease -
  EHC64_RS05145 (EHC64_05255) - 1034166..1034546 (+) 381 WP_005397224.1 RidA family protein -
  EHC64_RS05150 (EHC64_05260) - 1034562..1035839 (+) 1278 WP_140103474.1 serine dehydratase subunit alpha family protein -
  EHC64_RS05155 (EHC64_05265) - 1035868..1036527 (+) 660 WP_005397228.1 transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.70 Da        Isoelectric Point: 5.7468

>NTDB_id=288416 EHC64_RS05130 WP_025553812.1 1031034..1031633(+) (recR) [Vibrio parahaemolyticus strain 20140722001-1]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDVSEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=288416 EHC64_RS05130 WP_025553812.1 1031034..1031633(+) (recR) [Vibrio parahaemolyticus strain 20140722001-1]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATGTTTCTGAAGTGATCCTTGCCACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

100

0.437