Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC64_RS03110 Genome accession   NZ_CP034289
Coordinates   605390..605863 (-) Length   157 a.a.
NCBI ID   WP_114867853.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140722001-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 600390..610863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC64_RS03085 (EHC64_03155) - 600687..601700 (-) 1014 WP_114867858.1 hypothetical protein -
  EHC64_RS03090 (EHC64_03160) - 602105..602773 (+) 669 WP_159408076.1 inovirus Gp2 family protein -
  EHC64_RS03095 (EHC64_03165) - 602870..604027 (-) 1158 WP_114867856.1 hypothetical protein -
  EHC64_RS03100 (EHC64_03170) - 604057..604848 (-) 792 WP_114867855.1 YafY family protein -
  EHC64_RS03105 (EHC64_03175) - 604962..605393 (-) 432 WP_199482810.1 DUF2787 domain-containing protein -
  EHC64_RS03110 (EHC64_03180) radC 605390..605863 (-) 474 WP_114867853.1 RadC family protein Machinery gene
  EHC64_RS03115 (EHC64_03185) - 606009..606185 (+) 177 WP_039540865.1 AlpA family transcriptional regulator -
  EHC64_RS03120 (EHC64_03190) - 606347..606571 (+) 225 WP_039540862.1 hypothetical protein -
  EHC64_RS03125 (EHC64_03195) - 606583..607065 (+) 483 WP_114867852.1 DUF2787 domain-containing protein -
  EHC64_RS03130 (EHC64_03200) - 607145..608047 (+) 903 WP_236578031.1 LPD25 domain-containing protein -
  EHC64_RS03135 (EHC64_03205) - 608226..608810 (+) 585 WP_114867851.1 DUF2913 family protein -
  EHC64_RS03140 (EHC64_03210) - 608820..609158 (+) 339 WP_114867850.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17568.91 Da        Isoelectric Point: 5.9199

>NTDB_id=288405 EHC64_RS03110 WP_114867853.1 605390..605863(-) (radC) [Vibrio parahaemolyticus strain 20140722001-1]
MSTDNLHYQKQQKYQENEILEHAAEILANRYVRGDALCNPDATKEYVRFKLASAEQEVFALLLLDSQHRVIEFKPLFNGT
IDSASIYPREVVKTVLEANAAAVILAHNHPSGDPSPSQADRRITRKLVDTLALVDVKVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=288405 EHC64_RS03110 WP_114867853.1 605390..605863(-) (radC) [Vibrio parahaemolyticus strain 20140722001-1]
ATGTCGACCGATAACCTTCACTACCAAAAACAACAGAAATACCAAGAAAATGAAATCCTAGAGCATGCCGCCGAAATCCT
AGCTAACCGCTATGTCCGCGGCGATGCCCTTTGTAATCCGGATGCAACAAAAGAGTATGTTCGATTCAAATTAGCCAGCG
CAGAACAAGAAGTATTTGCGCTACTACTGCTCGACAGTCAGCACCGCGTCATTGAGTTCAAGCCGCTCTTCAACGGAACG
ATTGACTCTGCCAGTATTTATCCACGCGAGGTTGTCAAAACCGTCTTGGAGGCCAACGCTGCCGCCGTCATTCTGGCGCA
CAACCATCCATCAGGCGATCCATCACCATCTCAGGCAGATCGACGCATTACACGTAAGCTTGTCGATACTTTAGCGCTGG
TGGATGTCAAGGTTCTGGATCACATTGTGGTTGGAGAAAGCAGTGTCTCTTTTGCAGAGAAGGGATGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.255

87.261

0.395