Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CJ12567_RS06900 Genome accession   NZ_CP028909
Coordinates   1321142..1322110 (+) Length   322 a.a.
NCBI ID   WP_002865440.1    Uniprot ID   -
Organism   Campylobacter jejuni strain 12567     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316142..1327110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12567_RS06875 (CJ12567_1336) cdsA 1317049..1317774 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  CJ12567_RS06880 (CJ12567_1337) - 1317783..1318121 (-) 339 WP_002852397.1 hypothetical protein -
  CJ12567_RS06885 (CJ12567_1338) - 1318123..1319430 (-) 1308 WP_002871961.1 NFACT family protein -
  CJ12567_RS06890 (CJ12567_1339) mobA 1319492..1320067 (+) 576 WP_002877330.1 molybdenum cofactor guanylyltransferase -
  CJ12567_RS06895 (CJ12567_1340) pldA 1320064..1321056 (+) 993 WP_002877331.1 phospholipase A -
  CJ12567_RS06900 (CJ12567_1341) ceuB 1321142..1322110 (+) 969 WP_002865440.1 ABC transporter permease Machinery gene
  CJ12567_RS06905 (CJ12567_1342) ceuC 1322103..1323041 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  CJ12567_RS06910 (CJ12567_1343) ceuD 1323038..1323793 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  CJ12567_RS06915 (CJ12567_1344) ceuB 1323806..1324798 (+) 993 WP_002852385.1 enterochelin ABC transporter substrate-binding protein CeuB -
  CJ12567_RS06925 (CJ12567_1346) - 1325024..1325578 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35439.37 Da        Isoelectric Point: 9.6678

>NTDB_id=288404 CJ12567_RS06900 WP_002865440.1 1321142..1322110(+) (ceuB) [Campylobacter jejuni strain 12567]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=288404 CJ12567_RS06900 WP_002865440.1 1321142..1322110(+) (ceuB) [Campylobacter jejuni strain 12567]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAGTT
GCTCTACATTTCTTTACCGCTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment