Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CJ12567_RS05635 Genome accession   NZ_CP028909
Coordinates   1081175..1082134 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain 12567     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1061472..1095747 1081175..1082134 within 0


Gene organization within MGE regions


Location: 1061472..1095747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12567_RS05545 (CJ12567_1070) pglI 1061472..1062401 (-) 930 WP_002852770.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  CJ12567_RS05550 (CJ12567_1071) pglH 1062394..1063473 (-) 1080 WP_010891911.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  CJ12567_RS05555 (CJ12567_1072) pglK 1063470..1065164 (-) 1695 WP_052788448.1 ABC-type lipopolysaccharide transporter PglK -
  CJ12567_RS05560 (CJ12567_1073) galE 1065158..1066144 (-) 987 WP_002852683.1 UDP-glucose 4-epimerase GalE -
  CJ12567_RS05565 (CJ12567_1074) - 1066202..1066996 (-) 795 WP_002852820.1 3'-5' exonuclease -
  CJ12567_RS05570 (CJ12567_1075) waaC 1067063..1068091 (+) 1029 WP_002852873.1 lipopolysaccharide heptosyltransferase I -
  CJ12567_RS05575 (CJ12567_1076) htrB 1068081..1068968 (+) 888 WP_002864916.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  CJ12567_RS05580 (CJ12567_1077) - 1068965..1070512 (+) 1548 WP_002864915.1 glycosyltransferase -
  CJ12567_RS05585 (CJ12567_1078) - 1070516..1071688 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  CJ12567_RS05590 (CJ12567_1079) - 1071672..1072667 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  CJ12567_RS05595 (CJ12567_1080) - 1072725..1073894 (+) 1170 WP_002864814.1 glycosyltransferase family 2 protein -
  CJ12567_RS05600 (CJ12567_1081) wlaN 1073883..1074795 (-) 913 Protein_1085 beta-1,3 galactosyltransferase -
  CJ12567_RS05605 (CJ12567_1082) cstIII 1074850..1075734 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  CJ12567_RS05610 (CJ12567_1083) neuB1 1075715..1076746 (+) 1032 WP_002858213.1 sialic acid synthase -
  CJ12567_RS05615 (CJ12567_1084) neuC 1076743..1077858 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  CJ12567_RS09270 - 1077855..1078769 (+) 915 Protein_1089 beta-1,4-N-acetylgalactosaminyltransferase -
  CJ12567_RS09275 - 1078803..1079465 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  CJ12567_RS05625 (CJ12567_1086) - 1079460..1080308 (-) 849 WP_052799143.1 glycosyltransferase -
  CJ12567_RS05630 (CJ12567_1087) waaV 1080292..1081116 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  CJ12567_RS05635 (CJ12567_1088) waaF 1081175..1082134 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  CJ12567_RS05640 (CJ12567_1089) gmhA 1082115..1082675 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  CJ12567_RS05645 (CJ12567_1090) rfaE1 1082672..1084057 (-) 1386 WP_002858114.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CJ12567_RS05650 (CJ12567_1091) rfaD 1084050..1085003 (-) 954 WP_002858041.1 ADP-glyceromanno-heptose 6-epimerase -
  CJ12567_RS05655 (CJ12567_1092) gmhB 1085004..1085564 (-) 561 WP_002853963.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  CJ12567_RS05660 (CJ12567_1093) - 1085646..1085948 (+) 303 WP_002852762.1 cytochrome c -
  CJ12567_RS05665 (CJ12567_1094) ccoS 1085971..1086177 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  CJ12567_RS05670 (CJ12567_1095) - 1086174..1088531 (-) 2358 WP_072224466.1 heavy metal translocating P-type ATPase -
  CJ12567_RS05675 (CJ12567_1096) rho 1088640..1089938 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  CJ12567_RS05680 (CJ12567_1097) dnaX 1089942..1091477 (+) 1536 WP_002858347.1 DNA polymerase III subunit gamma/tau -
  CJ12567_RS05685 (CJ12567_1098) - 1091557..1093458 (+) 1902 WP_002857910.1 NAD(P)/FAD-dependent oxidoreductase -
  CJ12567_RS05690 (CJ12567_1099) copA 1093448..1095553 (-) 2106 WP_052788449.1 copper-translocating P-type ATPase CopA -
  CJ12567_RS05695 (CJ12567_1100) - 1095553..1095747 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=288398 CJ12567_RS05635 WP_002875425.1 1081175..1082134(+) (waaF) [Campylobacter jejuni strain 12567]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=288398 CJ12567_RS05635 WP_002875425.1 1081175..1082134(+) (waaF) [Campylobacter jejuni strain 12567]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment